Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AL049840.3-201ENST00000602669 611 ntBASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 TCAF1P1-201ENST00000414990 2232 ntBASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 CSF3-203ENST00000394148 622 ntTSL 3 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 AC002056.1-201ENST00000395613 760 ntBASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 AL139010.1-201ENST00000454878 894 ntBASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 RNA5SP415-201ENST00000517246 115 ntBASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 KRT19P2-202ENST00000557173 1012 ntBASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 AL031008.1-201ENST00000619963 541 ntBASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 AC116407.3-201ENST00000623905 1129 ntBASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 CICP20-201ENST00000443330 2801 ntBASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC28BQ9BUN5 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC28BQ9BUN5 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms