Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
VMP1Q96GC9 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.05■□□□□ -0
VMP1Q96GC9 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC15.05■□□□□ -0
VMP1Q96GC9 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.05■□□□□ -0
VMP1Q96GC9 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
VMP1Q96GC9 CICP24-201ENST00000605464 2705 ntBASIC15.05■□□□□ -0
VMP1Q96GC9 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
VMP1Q96GC9 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ -0
VMP1Q96GC9 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
VMP1Q96GC9 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
VMP1Q96GC9 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.04■□□□□ -0
VMP1Q96GC9 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
VMP1Q96GC9 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC15.04■□□□□ -0
VMP1Q96GC9 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VMP1Q96GC9 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC15.04■□□□□ -0
VMP1Q96GC9 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
VMP1Q96GC9 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
VMP1Q96GC9 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC15.04■□□□□ -0
VMP1Q96GC9 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
VMP1Q96GC9 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
VMP1Q96GC9 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
VMP1Q96GC9 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.04■□□□□ -0
VMP1Q96GC9 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.04■□□□□ -0
VMP1Q96GC9 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VMP1Q96GC9 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VMP1Q96GC9 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.04■□□□□ -0
VMP1Q96GC9 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VMP1Q96GC9 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC15.04■□□□□ -0
VMP1Q96GC9 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VMP1Q96GC9 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
VMP1Q96GC9 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.04■□□□□ -0
VMP1Q96GC9 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC15.04■□□□□ -0
VMP1Q96GC9 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC15.04■□□□□ -0
VMP1Q96GC9 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC15.04■□□□□ -0
VMP1Q96GC9 AC027369.6-201ENST00000525520 931 ntBASIC15.04■□□□□ -0
VMP1Q96GC9 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC15.04■□□□□ -0
VMP1Q96GC9 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
VMP1Q96GC9 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC15.04■□□□□ -0
VMP1Q96GC9 AL390955.2-201ENST00000603032 514 ntBASIC15.04■□□□□ -0
VMP1Q96GC9 AL390754.1-201ENST00000619088 582 ntBASIC15.04■□□□□ -0
VMP1Q96GC9 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
VMP1Q96GC9 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VMP1Q96GC9 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC15.04■□□□□ -0
VMP1Q96GC9 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC15.04■□□□□ -0
VMP1Q96GC9 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VMP1Q96GC9 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.04■□□□□ -0
VMP1Q96GC9 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VMP1Q96GC9 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC15.04■□□□□ -0
VMP1Q96GC9 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VMP1Q96GC9 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
VMP1Q96GC9 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
VMP1Q96GC9 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
VMP1Q96GC9 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
VMP1Q96GC9 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC15.03■□□□□ -0
VMP1Q96GC9 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.03■□□□□ -0
VMP1Q96GC9 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.03■□□□□ -0
VMP1Q96GC9 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.03■□□□□ -0
VMP1Q96GC9 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC15.03■□□□□ -0
VMP1Q96GC9 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC15.03■□□□□ -0
VMP1Q96GC9 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 AC092580.3-201ENST00000430932 139 ntBASIC15.03■□□□□ -0
VMP1Q96GC9 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC15.03■□□□□ -0
VMP1Q96GC9 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC15.03■□□□□ -0
VMP1Q96GC9 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC15.03■□□□□ -0
VMP1Q96GC9 LY6E-204ENST00000519546 971 ntTSL 2 BASIC15.03■□□□□ -0
VMP1Q96GC9 AQP6-203ENST00000551733 849 ntTSL 3 BASIC15.03■□□□□ -0
VMP1Q96GC9 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
VMP1Q96GC9 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC15.03■□□□□ -0
VMP1Q96GC9 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC15.03■□□□□ -0
VMP1Q96GC9 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC15.03■□□□□ -0
VMP1Q96GC9 AL133215.2-201ENST00000609242 977 ntBASIC15.03■□□□□ -0
VMP1Q96GC9 AL138828.2-201ENST00000615812 383 ntBASIC15.03■□□□□ -0
VMP1Q96GC9 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC15.03■□□□□ -0
VMP1Q96GC9 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.03■□□□□ -0
VMP1Q96GC9 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms