Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 GRK6P1-201ENST00000400595 1711 ntBASIC13.88□□□□□ -0.19
SKA3Q8IX90 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SKA3Q8IX90 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SKA3Q8IX90 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SKA3Q8IX90 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SKA3Q8IX90 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SKA3Q8IX90 TSSK5P-201ENST00000423978 907 ntBASIC13.88□□□□□ -0.19
SKA3Q8IX90 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SKA3Q8IX90 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SKA3Q8IX90 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SKA3Q8IX90 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 DUT-210ENST00000559935 569 ntTSL 3 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SKA3Q8IX90 AC025048.3-201ENST00000590609 569 ntBASIC13.88□□□□□ -0.19
SKA3Q8IX90 AC005498.2-205ENST00000593218 784 ntBASIC13.88□□□□□ -0.19
SKA3Q8IX90 AL844908.2-201ENST00000609461 460 ntBASIC13.88□□□□□ -0.19
SKA3Q8IX90 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 AC005702.4-201ENST00000618393 416 ntBASIC13.88□□□□□ -0.19
SKA3Q8IX90 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SKA3Q8IX90 ILF3-AS1-201ENST00000591501 1983 ntBASIC13.88□□□□□ -0.19
SKA3Q8IX90 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
SKA3Q8IX90 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
SKA3Q8IX90 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SKA3Q8IX90 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SKA3Q8IX90 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
SKA3Q8IX90 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
SKA3Q8IX90 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SKA3Q8IX90 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SKA3Q8IX90 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SKA3Q8IX90 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC13.88□□□□□ -0.19
SKA3Q8IX90 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC13.87□□□□□ -0.19
SKA3Q8IX90 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SKA3Q8IX90 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
SKA3Q8IX90 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SKA3Q8IX90 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
SKA3Q8IX90 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
SKA3Q8IX90 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
SKA3Q8IX90 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SKA3Q8IX90 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SKA3Q8IX90 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC13.87□□□□□ -0.19
SKA3Q8IX90 LOX-206ENST00000639739 1626 ntTSL 5 BASIC13.87□□□□□ -0.19
SKA3Q8IX90 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
SKA3Q8IX90 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SKA3Q8IX90 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SKA3Q8IX90 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
SKA3Q8IX90 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SKA3Q8IX90 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC13.87□□□□□ -0.19
SKA3Q8IX90 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC13.87□□□□□ -0.19
SKA3Q8IX90 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC13.87□□□□□ -0.19
SKA3Q8IX90 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
SKA3Q8IX90 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC13.87□□□□□ -0.19
SKA3Q8IX90 AC093214.1-201ENST00000511688 1107 ntBASIC13.87□□□□□ -0.19
SKA3Q8IX90 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC13.87□□□□□ -0.19
SKA3Q8IX90 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SKA3Q8IX90 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
SKA3Q8IX90 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SKA3Q8IX90 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SKA3Q8IX90 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC13.87□□□□□ -0.19
SKA3Q8IX90 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SKA3Q8IX90 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
SKA3Q8IX90 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SKA3Q8IX90 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SKA3Q8IX90 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SKA3Q8IX90 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
SKA3Q8IX90 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC13.87□□□□□ -0.19
SKA3Q8IX90 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SKA3Q8IX90 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SKA3Q8IX90 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC13.86□□□□□ -0.19
SKA3Q8IX90 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
SKA3Q8IX90 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
SKA3Q8IX90 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
SKA3Q8IX90 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
SKA3Q8IX90 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC13.86□□□□□ -0.19
SKA3Q8IX90 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SKA3Q8IX90 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC13.86□□□□□ -0.19
SKA3Q8IX90 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC13.86□□□□□ -0.19
SKA3Q8IX90 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC13.86□□□□□ -0.19
SKA3Q8IX90 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SKA3Q8IX90 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
SKA3Q8IX90 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC13.86□□□□□ -0.19
SKA3Q8IX90 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC13.86□□□□□ -0.19
SKA3Q8IX90 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SKA3Q8IX90 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms