Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 SPDYE19P-201ENST00000338590 713 ntBASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 MIR661-201ENST00000384842 89 ntBASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 AC093004.1-201ENST00000508850 424 ntBASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 MIR3197-201ENST00000582241 73 ntBASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 HADH-212ENST00000638621 741 ntTSL 5 BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 AC092384.3-202ENST00000564646 2873 ntBASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
NUP54Q7Z3B4 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 RHOA-206ENST00000454011 889 ntTSL 2 BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 SPDYE18-201ENST00000510091 1050 ntBASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 TPRX2P-201ENST00000535362 881 ntBASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC14.46□□□□□ -0.09
NUP54Q7Z3B4 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
NUP54Q7Z3B4 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC14.46□□□□□ -0.1
NUP54Q7Z3B4 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
NUP54Q7Z3B4 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
NUP54Q7Z3B4 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC14.46□□□□□ -0.1
NUP54Q7Z3B4 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
NUP54Q7Z3B4 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
NUP54Q7Z3B4 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.1
NUP54Q7Z3B4 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
NUP54Q7Z3B4 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
NUP54Q7Z3B4 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.46□□□□□ -0.1
NUP54Q7Z3B4 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
NUP54Q7Z3B4 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
NUP54Q7Z3B4 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.45□□□□□ -0.1
NUP54Q7Z3B4 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
NUP54Q7Z3B4 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
NUP54Q7Z3B4 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.45□□□□□ -0.1
NUP54Q7Z3B4 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
NUP54Q7Z3B4 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
NUP54Q7Z3B4 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.45□□□□□ -0.1
NUP54Q7Z3B4 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
NUP54Q7Z3B4 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
NUP54Q7Z3B4 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
NUP54Q7Z3B4 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms