Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC18.42■□□□□ 0.54
SYNE3Q6ZMZ3 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 AC144831.1-201ENST00000573312 2656 ntBASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 AL596257.1-201ENST00000641463 2694 ntBASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 AC114501.2-201ENST00000439631 535 ntBASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 RPL13P2-201ENST00000440687 659 ntBASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 AC135586.1-201ENST00000539323 574 ntBASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 AC004461.2-201ENST00000629517 803 ntBASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SYNE3Q6ZMZ3 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 AC013268.4-201ENST00000637413 2228 ntBASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 FAM8A3P-201ENST00000427218 844 ntBASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 AC090616.6-203ENST00000579186 1945 ntBASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 AC136621.1-201ENST00000624017 2304 ntBASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 PPT1-215ENST00000641471 2368 ntBASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
SYNE3Q6ZMZ3 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.54
SYNE3Q6ZMZ3 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
SYNE3Q6ZMZ3 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
SYNE3Q6ZMZ3 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.54
SYNE3Q6ZMZ3 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC18.39■□□□□ 0.53
SYNE3Q6ZMZ3 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms