Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 PGGT1BP2-201ENST00000398621 1028 ntBASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 WDR7-208ENST00000589935 544 ntTSL 4 BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 ILF3-AS1-201ENST00000591501 1983 ntBASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 AL805961.1-203ENST00000641078 1258 ntBASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC88AQ3V6T2 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
CCDC88AQ3V6T2 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
CCDC88AQ3V6T2 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC88AQ3V6T2 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CCDC88AQ3V6T2 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC88AQ3V6T2 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC88AQ3V6T2 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
CCDC88AQ3V6T2 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC88AQ3V6T2 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC88AQ3V6T2 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC88AQ3V6T2 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC88AQ3V6T2 COX6A1P2-201ENST00000620597 330 ntBASIC18.72■□□□□ 0.59
CCDC88AQ3V6T2 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC88AQ3V6T2 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC88AQ3V6T2 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC18.72■□□□□ 0.59
CCDC88AQ3V6T2 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC88AQ3V6T2 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC88AQ3V6T2 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC88AQ3V6T2 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC88AQ3V6T2 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC88AQ3V6T2 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC88AQ3V6T2 MFF-204ENST00000353339 2186 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC88AQ3V6T2 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CCDC88AQ3V6T2 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC88AQ3V6T2 AL139094.1-201ENST00000405549 1188 ntBASIC18.71■□□□□ 0.59
CCDC88AQ3V6T2 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC18.71■□□□□ 0.59
CCDC88AQ3V6T2 OR10B1P-201ENST00000601666 907 ntBASIC18.71■□□□□ 0.59
CCDC88AQ3V6T2 AC090164.2-201ENST00000611487 516 ntBASIC18.71■□□□□ 0.59
CCDC88AQ3V6T2 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC18.71■□□□□ 0.59
CCDC88AQ3V6T2 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC88AQ3V6T2 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC18.71■□□□□ 0.59
CCDC88AQ3V6T2 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC88AQ3V6T2 KRT8P4-201ENST00000509735 1454 ntBASIC18.71■□□□□ 0.59
CCDC88AQ3V6T2 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CCDC88AQ3V6T2 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC88AQ3V6T2 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC88AQ3V6T2 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC88AQ3V6T2 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC88AQ3V6T2 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CCDC88AQ3V6T2 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC88AQ3V6T2 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC18.71■□□□□ 0.59
CCDC88AQ3V6T2 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC88AQ3V6T2 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC18.71■□□□□ 0.59
CCDC88AQ3V6T2 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC88AQ3V6T2 BNIP3P13-201ENST00000599968 566 ntBASIC18.71■□□□□ 0.59
CCDC88AQ3V6T2 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.71■□□□□ 0.59
CCDC88AQ3V6T2 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC88AQ3V6T2 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.71■□□□□ 0.59
CCDC88AQ3V6T2 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.58
CCDC88AQ3V6T2 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.71■□□□□ 0.58
CCDC88AQ3V6T2 AC009090.5-201ENST00000624886 2285 ntBASIC18.7■□□□□ 0.58
CCDC88AQ3V6T2 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC88AQ3V6T2 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC88AQ3V6T2 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC88AQ3V6T2 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC88AQ3V6T2 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC88AQ3V6T2 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC18.7■□□□□ 0.58
CCDC88AQ3V6T2 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC88AQ3V6T2 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC18.7■□□□□ 0.58
CCDC88AQ3V6T2 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC88AQ3V6T2 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC18.7■□□□□ 0.58
CCDC88AQ3V6T2 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
CCDC88AQ3V6T2 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC88AQ3V6T2 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
CCDC88AQ3V6T2 MIR6756-201ENST00000616240 63 ntBASIC18.7■□□□□ 0.58
CCDC88AQ3V6T2 AP001065.2-201ENST00000617205 644 ntBASIC18.7■□□□□ 0.58
CCDC88AQ3V6T2 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC88AQ3V6T2 PRSS30P-206ENST00000641773 873 ntBASIC18.7■□□□□ 0.58
CCDC88AQ3V6T2 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC88AQ3V6T2 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC88AQ3V6T2 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC88AQ3V6T2 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC88AQ3V6T2 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC88AQ3V6T2 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CCDC88AQ3V6T2 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC88AQ3V6T2 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CCDC88AQ3V6T2 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms