Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL28A1Q2UY09 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC15.06■□□□□ 0
COL28A1Q2UY09 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
COL28A1Q2UY09 AC068587.6-202ENST00000641839 5619 ntBASIC15.06■□□□□ 0
COL28A1Q2UY09 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL28A1Q2UY09 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC15.06■□□□□ 0
COL28A1Q2UY09 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC15.06■□□□□ 0
COL28A1Q2UY09 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
COL28A1Q2UY09 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
COL28A1Q2UY09 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
COL28A1Q2UY09 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15.06■□□□□ 0
COL28A1Q2UY09 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC15.06■□□□□ 0
COL28A1Q2UY09 AL607033.1-201ENST00000623900 1599 ntBASIC15.06■□□□□ 0
COL28A1Q2UY09 TP73-213ENST00000604479 1623 ntTSL 5 BASIC15.06■□□□□ 0
COL28A1Q2UY09 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.06■□□□□ 0
COL28A1Q2UY09 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL28A1Q2UY09 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.06■□□□□ 0
COL28A1Q2UY09 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
COL28A1Q2UY09 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
COL28A1Q2UY09 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
COL28A1Q2UY09 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.05■□□□□ 0
COL28A1Q2UY09 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
COL28A1Q2UY09 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ 0
COL28A1Q2UY09 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.05■□□□□ 0
COL28A1Q2UY09 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ 0
COL28A1Q2UY09 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
COL28A1Q2UY09 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC15.05■□□□□ 0
COL28A1Q2UY09 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC15.05■□□□□ 0
COL28A1Q2UY09 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
COL28A1Q2UY09 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC15.05■□□□□ -0
COL28A1Q2UY09 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC15.05■□□□□ -0
COL28A1Q2UY09 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC15.05■□□□□ -0
COL28A1Q2UY09 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC15.05■□□□□ -0
COL28A1Q2UY09 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC15.05■□□□□ -0
COL28A1Q2UY09 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ -0
COL28A1Q2UY09 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC15.05■□□□□ -0
COL28A1Q2UY09 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC15.05■□□□□ -0
COL28A1Q2UY09 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15.05■□□□□ -0
COL28A1Q2UY09 ADM-202ENST00000524948 584 ntTSL 2 BASIC15.05■□□□□ -0
COL28A1Q2UY09 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC15.05■□□□□ -0
COL28A1Q2UY09 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC15.05■□□□□ -0
COL28A1Q2UY09 DUX4L45-201ENST00000566406 1057 ntBASIC15.05■□□□□ -0
COL28A1Q2UY09 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC15.05■□□□□ -0
COL28A1Q2UY09 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ -0
COL28A1Q2UY09 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC15.05■□□□□ -0
COL28A1Q2UY09 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC15.05■□□□□ -0
COL28A1Q2UY09 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC15.05■□□□□ -0
COL28A1Q2UY09 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
COL28A1Q2UY09 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC15.05■□□□□ -0
COL28A1Q2UY09 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
COL28A1Q2UY09 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC15.05■□□□□ -0
COL28A1Q2UY09 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ -0
COL28A1Q2UY09 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.05■□□□□ -0
COL28A1Q2UY09 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
COL28A1Q2UY09 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.05■□□□□ -0
COL28A1Q2UY09 FLJ16779-201ENST00000612722 7638 ntBASIC15.05■□□□□ -0
COL28A1Q2UY09 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
COL28A1Q2UY09 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.05■□□□□ -0
COL28A1Q2UY09 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ -0
COL28A1Q2UY09 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC15.05■□□□□ -0
COL28A1Q2UY09 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
COL28A1Q2UY09 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
COL28A1Q2UY09 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.05■□□□□ -0
COL28A1Q2UY09 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
COL28A1Q2UY09 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
COL28A1Q2UY09 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
COL28A1Q2UY09 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL28A1Q2UY09 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
COL28A1Q2UY09 AL662844.4-201ENST00000606367 2838 ntBASIC15.04■□□□□ -0
COL28A1Q2UY09 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL28A1Q2UY09 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL28A1Q2UY09 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL28A1Q2UY09 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC15.04■□□□□ -0
COL28A1Q2UY09 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL28A1Q2UY09 AC024909.3-201ENST00000611513 2257 ntBASIC15.04■□□□□ -0
COL28A1Q2UY09 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC15.04■□□□□ -0
COL28A1Q2UY09 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC15.04■□□□□ -0
COL28A1Q2UY09 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
COL28A1Q2UY09 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
COL28A1Q2UY09 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.04■□□□□ -0
COL28A1Q2UY09 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
COL28A1Q2UY09 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
COL28A1Q2UY09 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.04■□□□□ -0
COL28A1Q2UY09 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC15.04■□□□□ -0
COL28A1Q2UY09 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.04■□□□□ -0
COL28A1Q2UY09 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
COL28A1Q2UY09 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC15.04■□□□□ -0
COL28A1Q2UY09 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
COL28A1Q2UY09 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC15.04■□□□□ -0
COL28A1Q2UY09 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
COL28A1Q2UY09 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL28A1Q2UY09 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL28A1Q2UY09 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC15.04■□□□□ -0
COL28A1Q2UY09 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC15.04■□□□□ -0
COL28A1Q2UY09 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC15.04■□□□□ -0
COL28A1Q2UY09 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
COL28A1Q2UY09 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC15.04■□□□□ -0
COL28A1Q2UY09 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
COL28A1Q2UY09 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC15.04■□□□□ -0
COL28A1Q2UY09 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms