Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
RNF4P78317 WARS-232ENST00000556645 2508 ntTSL 5 BASIC14.45□□□□□ -0.1
RNF4P78317 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC14.45□□□□□ -0.1
RNF4P78317 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 AC105250.1-201ENST00000509378 2057 ntBASIC14.45□□□□□ -0.1
RNF4P78317 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
RNF4P78317 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RNF4P78317 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.44□□□□□ -0.1
RNF4P78317 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
RNF4P78317 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RNF4P78317 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RNF4P78317 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
RNF4P78317 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC14.44□□□□□ -0.1
RNF4P78317 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC14.44□□□□□ -0.1
RNF4P78317 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RNF4P78317 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RNF4P78317 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RNF4P78317 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.44□□□□□ -0.1
RNF4P78317 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC14.44□□□□□ -0.1
RNF4P78317 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
RNF4P78317 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC14.44□□□□□ -0.1
RNF4P78317 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
RNF4P78317 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
RNF4P78317 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC14.44□□□□□ -0.1
RNF4P78317 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RNF4P78317 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RNF4P78317 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RNF4P78317 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RNF4P78317 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
RNF4P78317 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC14.44□□□□□ -0.1
RNF4P78317 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RNF4P78317 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RNF4P78317 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RNF4P78317 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
RNF4P78317 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RNF4P78317 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RNF4P78317 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC14.44□□□□□ -0.1
RNF4P78317 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC14.44□□□□□ -0.1
RNF4P78317 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.44□□□□□ -0.1
RNF4P78317 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC14.44□□□□□ -0.1
RNF4P78317 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
RNF4P78317 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC14.44□□□□□ -0.1
RNF4P78317 AL049840.4-201ENST00000602422 811 ntBASIC14.44□□□□□ -0.1
RNF4P78317 AC012645.4-201ENST00000610691 1061 ntBASIC14.44□□□□□ -0.1
RNF4P78317 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC14.44□□□□□ -0.1
RNF4P78317 SRP9-204ENST00000619790 377 ntTSL 2 BASIC14.44□□□□□ -0.1
RNF4P78317 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.44□□□□□ -0.1
RNF4P78317 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.44□□□□□ -0.1
RNF4P78317 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
RNF4P78317 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC14.44□□□□□ -0.1
RNF4P78317 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
RNF4P78317 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RNF4P78317 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.44□□□□□ -0.1
RNF4P78317 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RNF4P78317 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
RNF4P78317 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC14.44□□□□□ -0.1
RNF4P78317 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RNF4P78317 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RNF4P78317 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.44□□□□□ -0.1
RNF4P78317 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.44□□□□□ -0.1
RNF4P78317 AGK-211ENST00000629555 2765 ntTSL 5 BASIC14.44□□□□□ -0.1
RNF4P78317 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.44□□□□□ -0.1
RNF4P78317 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
RNF4P78317 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RNF4P78317 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RNF4P78317 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RNF4P78317 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC14.43□□□□□ -0.1
RNF4P78317 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
RNF4P78317 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.43□□□□□ -0.1
RNF4P78317 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.43□□□□□ -0.1
RNF4P78317 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RNF4P78317 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
RNF4P78317 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC14.43□□□□□ -0.1
RNF4P78317 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
RNF4P78317 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC14.43□□□□□ -0.1
RNF4P78317 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.43□□□□□ -0.1
RNF4P78317 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RNF4P78317 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RNF4P78317 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RNF4P78317 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
RNF4P78317 GRAP-202ENST00000395635 834 ntTSL 2 BASIC14.43□□□□□ -0.1
RNF4P78317 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC14.43□□□□□ -0.1
RNF4P78317 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RNF4P78317 PTPA-220ENST00000436883 532 ntTSL 4 BASIC14.43□□□□□ -0.1
RNF4P78317 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RNF4P78317 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC14.43□□□□□ -0.1
RNF4P78317 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.43□□□□□ -0.1
RNF4P78317 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.43□□□□□ -0.1
RNF4P78317 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
RNF4P78317 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC14.43□□□□□ -0.1
RNF4P78317 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC14.43□□□□□ -0.1
RNF4P78317 TBCB-211ENST00000589996 724 ntTSL 3 BASIC14.43□□□□□ -0.1
RNF4P78317 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14.43□□□□□ -0.1
RNF4P78317 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RNF4P78317 WFDC1-204ENST00000613603 549 ntBASIC14.43□□□□□ -0.1
RNF4P78317 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms