Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.21■□□□□ 0.02
HNF4AP41235 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
HNF4AP41235 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC15.21■□□□□ 0.02
HNF4AP41235 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HNF4AP41235 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC15.2■□□□□ 0.02
HNF4AP41235 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HNF4AP41235 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15.2■□□□□ 0.02
HNF4AP41235 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HNF4AP41235 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HNF4AP41235 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HNF4AP41235 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HNF4AP41235 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HNF4AP41235 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HNF4AP41235 AC023157.3-201ENST00000619086 2088 ntBASIC15.2■□□□□ 0.02
HNF4AP41235 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HNF4AP41235 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.2■□□□□ 0.02
HNF4AP41235 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
HNF4AP41235 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HNF4AP41235 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HNF4AP41235 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HNF4AP41235 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HNF4AP41235 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
HNF4AP41235 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
HNF4AP41235 AL080243.2-201ENST00000418783 582 ntBASIC15.2■□□□□ 0.02
HNF4AP41235 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HNF4AP41235 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC15.2■□□□□ 0.02
HNF4AP41235 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
HNF4AP41235 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
HNF4AP41235 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HNF4AP41235 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC15.2■□□□□ 0.02
HNF4AP41235 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HNF4AP41235 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
HNF4AP41235 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
HNF4AP41235 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
HNF4AP41235 AC009090.5-201ENST00000624886 2285 ntBASIC15.2■□□□□ 0.02
HNF4AP41235 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HNF4AP41235 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HNF4AP41235 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HNF4AP41235 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
HNF4AP41235 AL109954.1-202ENST00000564051 2148 ntBASIC15.2■□□□□ 0.02
HNF4AP41235 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HNF4AP41235 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HNF4AP41235 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HNF4AP41235 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.2■□□□□ 0.02
HNF4AP41235 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.19■□□□□ 0.02
HNF4AP41235 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
HNF4AP41235 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.19■□□□□ 0.02
HNF4AP41235 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
HNF4AP41235 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC15.19■□□□□ 0.02
HNF4AP41235 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.19■□□□□ 0.02
HNF4AP41235 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
HNF4AP41235 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 HNRNPA3P1-201ENST00000401429 1139 ntBASIC15.19■□□□□ 0.02
HNF4AP41235 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC15.19■□□□□ 0.02
HNF4AP41235 AC092580.3-201ENST00000430932 139 ntBASIC15.19■□□□□ 0.02
HNF4AP41235 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.19■□□□□ 0.02
HNF4AP41235 HNRNPA3P5-201ENST00000455201 833 ntBASIC15.19■□□□□ 0.02
HNF4AP41235 HLA-V-204ENST00000476601 1289 ntBASIC15.19■□□□□ 0.02
HNF4AP41235 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC15.19■□□□□ 0.02
HNF4AP41235 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.19■□□□□ 0.02
HNF4AP41235 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC15.19■□□□□ 0.02
HNF4AP41235 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.19■□□□□ 0.02
HNF4AP41235 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC15.19■□□□□ 0.02
HNF4AP41235 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.19■□□□□ 0.02
HNF4AP41235 TEX28P1-201ENST00000613479 1221 ntBASIC15.19■□□□□ 0.02
HNF4AP41235 TEX28P2-201ENST00000617764 1221 ntBASIC15.19■□□□□ 0.02
HNF4AP41235 ORC5-208ENST00000626700 344 ntTSL 3 BASIC15.19■□□□□ 0.02
HNF4AP41235 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.19■□□□□ 0.02
HNF4AP41235 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.19■□□□□ 0.02
HNF4AP41235 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.19■□□□□ 0.02
HNF4AP41235 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC15.19■□□□□ 0.02
HNF4AP41235 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC15.19■□□□□ 0.02
HNF4AP41235 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
HNF4AP41235 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC15.19■□□□□ 0.02
HNF4AP41235 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.19■□□□□ 0.02
HNF4AP41235 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HNF4AP41235 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
HNF4AP41235 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms