Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
SOX3P41225 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
SOX3P41225 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.76□□□□□ -0.05
SOX3P41225 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SOX3P41225 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
SOX3P41225 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SOX3P41225 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SOX3P41225 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.76□□□□□ -0.05
SOX3P41225 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
SOX3P41225 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SOX3P41225 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
SOX3P41225 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
SOX3P41225 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SOX3P41225 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SOX3P41225 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
SOX3P41225 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SOX3P41225 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SOX3P41225 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
SOX3P41225 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SOX3P41225 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SOX3P41225 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
SOX3P41225 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SOX3P41225 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC14.75□□□□□ -0.05
SOX3P41225 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC14.75□□□□□ -0.05
SOX3P41225 GSN-203ENST00000373808 2664 ntTSL 2 BASIC14.75□□□□□ -0.05
SOX3P41225 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.75□□□□□ -0.05
SOX3P41225 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
SOX3P41225 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
SOX3P41225 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SOX3P41225 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SOX3P41225 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
SOX3P41225 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC14.75□□□□□ -0.05
SOX3P41225 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SOX3P41225 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC14.75□□□□□ -0.05
SOX3P41225 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SOX3P41225 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
SOX3P41225 TMPRSS11CP-201ENST00000453277 683 ntBASIC14.75□□□□□ -0.05
SOX3P41225 FXR1-221ENST00000491674 365 ntTSL 2 BASIC14.75□□□□□ -0.05
SOX3P41225 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SOX3P41225 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC14.75□□□□□ -0.05
SOX3P41225 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.75□□□□□ -0.05
SOX3P41225 ZNF890P-202ENST00000530367 1156 ntBASIC14.75□□□□□ -0.05
SOX3P41225 POLD4-211ENST00000539074 714 ntTSL 3 BASIC14.75□□□□□ -0.05
SOX3P41225 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
SOX3P41225 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC14.75□□□□□ -0.05
SOX3P41225 SPIB-207ENST00000597855 564 ntTSL 4 BASIC14.75□□□□□ -0.05
SOX3P41225 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.75□□□□□ -0.05
SOX3P41225 AC009118.2-201ENST00000613275 655 ntBASIC14.75□□□□□ -0.05
SOX3P41225 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC14.75□□□□□ -0.05
SOX3P41225 AC004840.1-201ENST00000636359 365 ntBASIC14.75□□□□□ -0.05
SOX3P41225 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SOX3P41225 BNIP3P1-202ENST00000550043 1585 ntBASIC14.75□□□□□ -0.05
SOX3P41225 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
SOX3P41225 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SOX3P41225 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SOX3P41225 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SOX3P41225 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC14.75□□□□□ -0.05
SOX3P41225 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC14.75□□□□□ -0.05
SOX3P41225 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SOX3P41225 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
SOX3P41225 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC14.75□□□□□ -0.05
SOX3P41225 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
SOX3P41225 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
SOX3P41225 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SOX3P41225 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SOX3P41225 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
SOX3P41225 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
SOX3P41225 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
SOX3P41225 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SOX3P41225 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.74□□□□□ -0.05
SOX3P41225 AC134407.2-201ENST00000625089 1978 ntBASIC14.74□□□□□ -0.05
SOX3P41225 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SOX3P41225 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC14.74□□□□□ -0.05
SOX3P41225 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
SOX3P41225 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC14.74□□□□□ -0.05
SOX3P41225 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SOX3P41225 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
SOX3P41225 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
SOX3P41225 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
SOX3P41225 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SOX3P41225 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
SOX3P41225 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SOX3P41225 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
SOX3P41225 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SOX3P41225 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.74□□□□□ -0.05
SOX3P41225 ELP6-209ENST00000446787 894 ntTSL 3 BASIC14.74□□□□□ -0.05
SOX3P41225 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.74□□□□□ -0.05
SOX3P41225 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC14.74□□□□□ -0.05
SOX3P41225 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC14.74□□□□□ -0.05
SOX3P41225 AC135586.1-201ENST00000539323 574 ntBASIC14.74□□□□□ -0.05
SOX3P41225 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SOX3P41225 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
SOX3P41225 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
SOX3P41225 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC14.74□□□□□ -0.05
SOX3P41225 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
SOX3P41225 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
SOX3P41225 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SOX3P41225 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.74□□□□□ -0.05
SOX3P41225 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
SOX3P41225 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms