Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL9A1P20849 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
COL9A1P20849 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL9A1P20849 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL9A1P20849 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.92■□□□□ 0.14
COL9A1P20849 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL9A1P20849 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL9A1P20849 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL9A1P20849 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL9A1P20849 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.92■□□□□ 0.14
COL9A1P20849 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL9A1P20849 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC15.92■□□□□ 0.14
COL9A1P20849 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL9A1P20849 HCG27-204ENST00000424675 895 ntTSL 3 BASIC15.92■□□□□ 0.14
COL9A1P20849 AC073115.1-201ENST00000436056 532 ntTSL 4 BASIC15.92■□□□□ 0.14
COL9A1P20849 AC006335.1-201ENST00000445200 547 ntBASIC15.92■□□□□ 0.14
COL9A1P20849 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC15.92■□□□□ 0.14
COL9A1P20849 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.14
COL9A1P20849 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC15.92■□□□□ 0.14
COL9A1P20849 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL9A1P20849 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.14
COL9A1P20849 KRT8P2-201ENST00000556193 944 ntBASIC15.92■□□□□ 0.14
COL9A1P20849 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC15.92■□□□□ 0.14
COL9A1P20849 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC15.92■□□□□ 0.14
COL9A1P20849 AC108673.2-201ENST00000608909 565 ntBASIC15.92■□□□□ 0.14
COL9A1P20849 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL9A1P20849 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL9A1P20849 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL9A1P20849 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
COL9A1P20849 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC15.92■□□□□ 0.14
COL9A1P20849 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
COL9A1P20849 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL9A1P20849 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.92■□□□□ 0.14
COL9A1P20849 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL9A1P20849 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
COL9A1P20849 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC15.92■□□□□ 0.14
COL9A1P20849 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.92■□□□□ 0.14
COL9A1P20849 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.91■□□□□ 0.14
COL9A1P20849 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
COL9A1P20849 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL9A1P20849 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL9A1P20849 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.91■□□□□ 0.14
COL9A1P20849 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC15.91■□□□□ 0.14
COL9A1P20849 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL9A1P20849 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC15.91■□□□□ 0.14
COL9A1P20849 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
COL9A1P20849 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
COL9A1P20849 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL9A1P20849 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC15.91■□□□□ 0.14
COL9A1P20849 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL9A1P20849 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC15.91■□□□□ 0.14
COL9A1P20849 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL9A1P20849 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
COL9A1P20849 NDUFAB1P1-201ENST00000404262 460 ntBASIC15.91■□□□□ 0.14
COL9A1P20849 SMIM26-201ENST00000411646 505 ntAPPRIS P5 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL9A1P20849 CMC1-204ENST00000423894 549 ntTSL 2 BASIC15.91■□□□□ 0.14
COL9A1P20849 AC023141.7-201ENST00000430646 407 ntBASIC15.91■□□□□ 0.14
COL9A1P20849 SMIM26-202ENST00000435844 575 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL9A1P20849 IMMP2L-204ENST00000447215 1164 ntTSL 3 BASIC15.91■□□□□ 0.14
COL9A1P20849 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL9A1P20849 AL353637.1-201ENST00000451571 732 ntBASIC15.91■□□□□ 0.14
COL9A1P20849 SCARNA21-201ENST00000517026 139 ntBASIC15.91■□□□□ 0.14
COL9A1P20849 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC15.91■□□□□ 0.14
COL9A1P20849 SLC14A1-206ENST00000535474 1048 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL9A1P20849 RTN3P1-201ENST00000536295 711 ntBASIC15.91■□□□□ 0.14
COL9A1P20849 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC15.91■□□□□ 0.14
COL9A1P20849 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC15.91■□□□□ 0.14
COL9A1P20849 AC027348.2-201ENST00000624375 642 ntBASIC15.91■□□□□ 0.14
COL9A1P20849 AC006453.4-201ENST00000636949 1252 ntBASIC15.91■□□□□ 0.14
COL9A1P20849 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL9A1P20849 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL9A1P20849 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC15.91■□□□□ 0.14
COL9A1P20849 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.91■□□□□ 0.14
COL9A1P20849 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL9A1P20849 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL9A1P20849 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL9A1P20849 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL9A1P20849 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL9A1P20849 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC15.91■□□□□ 0.14
COL9A1P20849 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC15.91■□□□□ 0.14
COL9A1P20849 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL9A1P20849 LINC01837-201ENST00000590021 1320 ntTSL 5 BASIC15.91■□□□□ 0.14
COL9A1P20849 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL9A1P20849 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL9A1P20849 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL9A1P20849 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL9A1P20849 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
COL9A1P20849 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL9A1P20849 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
COL9A1P20849 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL9A1P20849 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
COL9A1P20849 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
COL9A1P20849 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL9A1P20849 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
COL9A1P20849 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL9A1P20849 AC018892.3-201ENST00000623986 2499 ntBASIC15.9■□□□□ 0.14
COL9A1P20849 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL9A1P20849 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL9A1P20849 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.9■□□□□ 0.14
COL9A1P20849 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms