Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
CXCL1P09341 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CXCL1P09341 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CXCL1P09341 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
CXCL1P09341 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
CXCL1P09341 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
CXCL1P09341 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CXCL1P09341 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC12.17□□□□□ -0.46
CXCL1P09341 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC12.17□□□□□ -0.46
CXCL1P09341 PGAM1P5-202ENST00000552554 2148 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CXCL1P09341 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC12.17□□□□□ -0.46
CXCL1P09341 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CXCL1P09341 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CXCL1P09341 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC12.17□□□□□ -0.46
CXCL1P09341 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CXCL1P09341 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC12.17□□□□□ -0.46
CXCL1P09341 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC12.17□□□□□ -0.46
CXCL1P09341 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CXCL1P09341 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC12.17□□□□□ -0.46
CXCL1P09341 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
CXCL1P09341 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC12.17□□□□□ -0.46
CXCL1P09341 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC12.16□□□□□ -0.46
CXCL1P09341 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC12.16□□□□□ -0.46
CXCL1P09341 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
CXCL1P09341 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC12.16□□□□□ -0.46
CXCL1P09341 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC12.16□□□□□ -0.46
CXCL1P09341 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC12.16□□□□□ -0.46
CXCL1P09341 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
CXCL1P09341 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC12.16□□□□□ -0.46
CXCL1P09341 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
CXCL1P09341 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
CXCL1P09341 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
CXCL1P09341 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC12.16□□□□□ -0.46
CXCL1P09341 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC12.16□□□□□ -0.46
CXCL1P09341 HAUS4P1-201ENST00000406739 1145 ntBASIC12.16□□□□□ -0.46
CXCL1P09341 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC12.16□□□□□ -0.46
CXCL1P09341 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC12.16□□□□□ -0.46
CXCL1P09341 TSSC2-201ENST00000450217 709 ntBASIC12.16□□□□□ -0.46
CXCL1P09341 AC087163.2-201ENST00000457299 853 ntBASIC12.16□□□□□ -0.46
CXCL1P09341 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC12.16□□□□□ -0.46
CXCL1P09341 CYP2A7P1-201ENST00000595391 815 ntBASIC12.16□□□□□ -0.46
CXCL1P09341 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC12.16□□□□□ -0.46
CXCL1P09341 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC12.16□□□□□ -0.46
CXCL1P09341 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC12.16□□□□□ -0.46
CXCL1P09341 AL022326.1-202ENST00000641533 845 ntBASIC12.16□□□□□ -0.46
CXCL1P09341 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC12.16□□□□□ -0.46
CXCL1P09341 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
CXCL1P09341 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC12.16□□□□□ -0.46
CXCL1P09341 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC12.16□□□□□ -0.46
CXCL1P09341 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC12.16□□□□□ -0.46
CXCL1P09341 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC12.16□□□□□ -0.46
CXCL1P09341 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC12.16□□□□□ -0.46
CXCL1P09341 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
CXCL1P09341 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC12.16□□□□□ -0.46
CXCL1P09341 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC12.16□□□□□ -0.46
CXCL1P09341 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
CXCL1P09341 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CXCL1P09341 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms