Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC18.01■□□□□ 0.47
CTDNEP1O95476 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC18.01■□□□□ 0.47
CTDNEP1O95476 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC18.01■□□□□ 0.47
CTDNEP1O95476 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTDNEP1O95476 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
CTDNEP1O95476 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CTDNEP1O95476 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
CTDNEP1O95476 AL645728.2-202ENST00000641679 227 ntBASIC18.01■□□□□ 0.47
CTDNEP1O95476 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CTDNEP1O95476 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTDNEP1O95476 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTDNEP1O95476 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTDNEP1O95476 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTDNEP1O95476 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTDNEP1O95476 AC013726.1-201ENST00000563747 2285 ntBASIC18.01■□□□□ 0.47
CTDNEP1O95476 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTDNEP1O95476 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC18.01■□□□□ 0.47
CTDNEP1O95476 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CTDNEP1O95476 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CTDNEP1O95476 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC18■□□□□ 0.47
CTDNEP1O95476 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
CTDNEP1O95476 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC18■□□□□ 0.47
CTDNEP1O95476 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC18■□□□□ 0.47
CTDNEP1O95476 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC18■□□□□ 0.47
CTDNEP1O95476 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CTDNEP1O95476 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC18■□□□□ 0.47
CTDNEP1O95476 TIMM17BP1-201ENST00000545713 516 ntBASIC18■□□□□ 0.47
CTDNEP1O95476 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC18■□□□□ 0.47
CTDNEP1O95476 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC18■□□□□ 0.47
CTDNEP1O95476 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC18■□□□□ 0.47
CTDNEP1O95476 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 ORC5-208ENST00000626700 344 ntTSL 3 BASIC18■□□□□ 0.47
CTDNEP1O95476 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 WASH3P-207ENST00000560956 1394 ntBASIC18■□□□□ 0.47
CTDNEP1O95476 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
CTDNEP1O95476 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC18■□□□□ 0.47
CTDNEP1O95476 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC18■□□□□ 0.47
CTDNEP1O95476 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18■□□□□ 0.47
CTDNEP1O95476 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC18■□□□□ 0.47
CTDNEP1O95476 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC18■□□□□ 0.47
CTDNEP1O95476 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC18■□□□□ 0.47
CTDNEP1O95476 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.99■□□□□ 0.47
CTDNEP1O95476 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTDNEP1O95476 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC17.99■□□□□ 0.47
CTDNEP1O95476 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC17.99■□□□□ 0.47
CTDNEP1O95476 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CTDNEP1O95476 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC17.99■□□□□ 0.47
CTDNEP1O95476 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
CTDNEP1O95476 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTDNEP1O95476 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTDNEP1O95476 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC17.99■□□□□ 0.47
CTDNEP1O95476 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC17.99■□□□□ 0.47
CTDNEP1O95476 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
CTDNEP1O95476 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTDNEP1O95476 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTDNEP1O95476 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTDNEP1O95476 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTDNEP1O95476 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTDNEP1O95476 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
CTDNEP1O95476 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CTDNEP1O95476 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTDNEP1O95476 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC17.99■□□□□ 0.47
CTDNEP1O95476 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CTDNEP1O95476 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC17.99■□□□□ 0.47
CTDNEP1O95476 CYMP-203ENST00000474680 1263 ntBASIC17.99■□□□□ 0.47
CTDNEP1O95476 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC17.99■□□□□ 0.47
CTDNEP1O95476 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC17.99■□□□□ 0.47
CTDNEP1O95476 AC023310.3-201ENST00000557027 670 ntBASIC17.99■□□□□ 0.47
CTDNEP1O95476 AC100756.1-201ENST00000562736 682 ntBASIC17.99■□□□□ 0.47
CTDNEP1O95476 AC138749.3-201ENST00000567691 622 ntBASIC17.99■□□□□ 0.47
CTDNEP1O95476 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC17.99■□□□□ 0.47
CTDNEP1O95476 RNA5-8SN1-201ENST00000610460 153 ntBASIC17.99■□□□□ 0.47
CTDNEP1O95476 AC116165.1-201ENST00000611806 668 ntBASIC17.99■□□□□ 0.47
CTDNEP1O95476 RNA5-8SN5-202ENST00000612463 153 ntBASIC17.99■□□□□ 0.47
CTDNEP1O95476 RNA5-8SN4-201ENST00000613359 153 ntBASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms