Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC11.48□□□□□ -0.57
SMKR1H3BMG3 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 AC138969.2-201ENST00000532739 9932 ntBASIC11.48□□□□□ -0.57
SMKR1H3BMG3 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 BET1L-202ENST00000332865 533 ntTSL 5 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 HMGA1P7-201ENST00000406908 502 ntBASIC11.48□□□□□ -0.57
SMKR1H3BMG3 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 RN7SL850P-201ENST00000579959 291 ntBASIC11.48□□□□□ -0.57
SMKR1H3BMG3 MIR4515-201ENST00000584082 81 ntBASIC11.48□□□□□ -0.57
SMKR1H3BMG3 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 AL137784.3-201ENST00000623858 2288 ntBASIC11.48□□□□□ -0.57
SMKR1H3BMG3 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
SMKR1H3BMG3 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
SMKR1H3BMG3 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
SMKR1H3BMG3 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC11.47□□□□□ -0.57
SMKR1H3BMG3 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
SMKR1H3BMG3 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
SMKR1H3BMG3 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
SMKR1H3BMG3 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
SMKR1H3BMG3 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
SMKR1H3BMG3 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
SMKR1H3BMG3 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC11.47□□□□□ -0.57
SMKR1H3BMG3 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
SMKR1H3BMG3 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
SMKR1H3BMG3 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
SMKR1H3BMG3 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC11.47□□□□□ -0.57
SMKR1H3BMG3 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
SMKR1H3BMG3 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms