Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 RN7SL399P-201ENST00000471648 279 ntBASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 RN7SL204P-201ENST00000582831 262 ntBASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 AC009118.2-201ENST00000613275 655 ntBASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 MIR8072-201ENST00000614241 80 ntBASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 AGAP7P-201ENST00000582299 2062 ntBASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 AGAP14-201ENST00000624701 2060 ntBASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 FAM86LP-201ENST00000478302 853 ntBASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 CD81-207ENST00000481687 890 ntTSL 2 BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 GPR39-203ENST00000622084 900 ntTSL 5 BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
BLOC1S4Q9NUP1 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 SLC7A15P-201ENST00000424028 1363 ntBASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 LINC00528-201ENST00000600723 2160 ntBASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 LINC02560-201ENST00000596379 459 ntBASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC17.29■□□□□ 0.36
BLOC1S4Q9NUP1 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms