Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 AC136759.1-202ENST00000530858 2194 ntBASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 AC079781.5-202ENST00000641784 3743 ntBASIC15.26■□□□□ 0.03
CCDC28BQ9BUN5 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 BCAR1-209ENST00000546196 1340 ntBASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 AC140479.7-201ENST00000636301 2332 ntBASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 HNRNPUP1-201ENST00000554987 333 ntBASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 MIR7706-201ENST00000613747 67 ntBASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 AC012313.10-201ENST00000623509 926 ntBASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 AC004877.2-201ENST00000623941 599 ntBASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 MYO15B-237ENST00000642007 4893 ntBASIC15.25■□□□□ 0.03
CCDC28BQ9BUN5 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 CR383656.2-201ENST00000548656 2254 ntBASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 CYP4F24P-201ENST00000586049 1580 ntBASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 AC007686.3-201ENST00000619017 3487 ntBASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 EMBP1-201ENST00000458200 901 ntBASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC15.24■□□□□ 0.03
CCDC28BQ9BUN5 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms