Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
NUDCD3Q8IVD9 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
NUDCD3Q8IVD9 AC067750.1-201ENST00000608826 6545 ntBASIC15.6■□□□□ 0.09
NUDCD3Q8IVD9 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
NUDCD3Q8IVD9 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.6■□□□□ 0.09
NUDCD3Q8IVD9 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC15.6■□□□□ 0.09
NUDCD3Q8IVD9 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.6■□□□□ 0.09
NUDCD3Q8IVD9 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
NUDCD3Q8IVD9 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
NUDCD3Q8IVD9 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
NUDCD3Q8IVD9 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC15.6■□□□□ 0.09
NUDCD3Q8IVD9 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
NUDCD3Q8IVD9 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
NUDCD3Q8IVD9 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC15.6■□□□□ 0.09
NUDCD3Q8IVD9 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
NUDCD3Q8IVD9 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
NUDCD3Q8IVD9 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
NUDCD3Q8IVD9 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
NUDCD3Q8IVD9 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
NUDCD3Q8IVD9 AL136982.4-201ENST00000437689 1740 ntBASIC15.6■□□□□ 0.09
NUDCD3Q8IVD9 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
NUDCD3Q8IVD9 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
NUDCD3Q8IVD9 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.6■□□□□ 0.09
NUDCD3Q8IVD9 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.6■□□□□ 0.09
NUDCD3Q8IVD9 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
NUDCD3Q8IVD9 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
NUDCD3Q8IVD9 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 ST20-AS1-201ENST00000560255 4223 ntBASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 CSF3-203ENST00000394148 622 ntTSL 3 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 MIR1224-201ENST00000408193 85 ntBASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 RNA5SP415-201ENST00000517246 115 ntBASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 MIR7706-201ENST00000613747 67 ntBASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 AL773604.1-201ENST00000617417 272 ntBASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 KRT8P37-201ENST00000451609 1420 ntBASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
NUDCD3Q8IVD9 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.09
NUDCD3Q8IVD9 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
NUDCD3Q8IVD9 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
NUDCD3Q8IVD9 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
NUDCD3Q8IVD9 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC15.58■□□□□ 0.09
NUDCD3Q8IVD9 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
NUDCD3Q8IVD9 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
NUDCD3Q8IVD9 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
NUDCD3Q8IVD9 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NUDCD3Q8IVD9 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC15.58■□□□□ 0.08
NUDCD3Q8IVD9 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
NUDCD3Q8IVD9 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
NUDCD3Q8IVD9 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NUDCD3Q8IVD9 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
NUDCD3Q8IVD9 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NUDCD3Q8IVD9 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
NUDCD3Q8IVD9 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.58■□□□□ 0.08
NUDCD3Q8IVD9 AL031284.1-201ENST00000419297 478 ntBASIC15.58■□□□□ 0.08
NUDCD3Q8IVD9 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC15.58■□□□□ 0.08
NUDCD3Q8IVD9 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC15.58■□□□□ 0.08
NUDCD3Q8IVD9 AC105233.2-201ENST00000523697 349 ntBASIC15.58■□□□□ 0.08
NUDCD3Q8IVD9 AF228730.5-201ENST00000530288 346 ntBASIC15.58■□□□□ 0.08
NUDCD3Q8IVD9 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC15.58■□□□□ 0.08
NUDCD3Q8IVD9 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.58■□□□□ 0.08
NUDCD3Q8IVD9 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms