Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC88AQ3V6T2 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC88AQ3V6T2 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CCDC88AQ3V6T2 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC88AQ3V6T2 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC88AQ3V6T2 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC88AQ3V6T2 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC88AQ3V6T2 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC88AQ3V6T2 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC88AQ3V6T2 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC88AQ3V6T2 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CCDC88AQ3V6T2 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC88AQ3V6T2 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC88AQ3V6T2 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC88AQ3V6T2 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC18.76■□□□□ 0.59
CCDC88AQ3V6T2 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC88AQ3V6T2 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
CCDC88AQ3V6T2 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 RPL13AP19-201ENST00000434320 584 ntBASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 AC100757.4-201ENST00000626934 759 ntBASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 AL118508.1-201ENST00000613502 2345 ntBASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 AL513523.2-202ENST00000427283 2040 ntBASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 TPM3P8-201ENST00000330554 643 ntBASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 KRT18P66-201ENST00000452970 1269 ntBASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 AL023803.2-201ENST00000620080 638 ntBASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC88AQ3V6T2 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 DPM3-202ENST00000368399 517 ntBASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 AL136309.1-201ENST00000403917 691 ntBASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 RPSAP31-201ENST00000416648 895 ntBASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 AC098935.1-201ENST00000446057 611 ntBASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 RN7SL48P-201ENST00000579283 293 ntBASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 KRT8P14-201ENST00000414254 1442 ntBASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC18.74■□□□□ 0.59
CCDC88AQ3V6T2 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CCDC88AQ3V6T2 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms