Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC16.34■□□□□ 0.21
COL4A4P53420 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL4A4P53420 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL4A4P53420 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
COL4A4P53420 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
COL4A4P53420 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL4A4P53420 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL4A4P53420 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL4A4P53420 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL4A4P53420 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL4A4P53420 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC16.34■□□□□ 0.21
COL4A4P53420 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC16.34■□□□□ 0.21
COL4A4P53420 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC16.34■□□□□ 0.21
COL4A4P53420 AC100850.1-201ENST00000506768 649 ntBASIC16.34■□□□□ 0.21
COL4A4P53420 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC16.34■□□□□ 0.21
COL4A4P53420 CTBP2P4-201ENST00000513884 920 ntBASIC16.34■□□□□ 0.21
COL4A4P53420 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC16.34■□□□□ 0.21
COL4A4P53420 SYT17-208ENST00000568433 812 ntTSL 3 BASIC16.34■□□□□ 0.21
COL4A4P53420 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC16.34■□□□□ 0.21
COL4A4P53420 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC16.34■□□□□ 0.21
COL4A4P53420 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL4A4P53420 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
COL4A4P53420 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL4A4P53420 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL4A4P53420 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC16.33■□□□□ 0.21
COL4A4P53420 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL4A4P53420 AC127383.1-201ENST00000444697 1800 ntBASIC16.33■□□□□ 0.2
COL4A4P53420 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A4P53420 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A4P53420 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A4P53420 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A4P53420 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A4P53420 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.33■□□□□ 0.2
COL4A4P53420 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
COL4A4P53420 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A4P53420 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC16.33■□□□□ 0.2
COL4A4P53420 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A4P53420 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
COL4A4P53420 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC16.33■□□□□ 0.2
COL4A4P53420 MARK2P5-201ENST00000507649 634 ntBASIC16.33■□□□□ 0.2
COL4A4P53420 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A4P53420 MIR4783-201ENST00000580343 82 ntBASIC16.33■□□□□ 0.2
COL4A4P53420 AL353726.2-201ENST00000623259 884 ntBASIC16.33■□□□□ 0.2
COL4A4P53420 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A4P53420 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A4P53420 MFF-204ENST00000353339 2186 ntTSL 5 BASIC16.33■□□□□ 0.2
COL4A4P53420 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
COL4A4P53420 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A4P53420 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A4P53420 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A4P53420 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
COL4A4P53420 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A4P53420 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16.32■□□□□ 0.2
COL4A4P53420 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A4P53420 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A4P53420 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
COL4A4P53420 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A4P53420 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A4P53420 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A4P53420 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.32■□□□□ 0.2
COL4A4P53420 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A4P53420 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC16.32■□□□□ 0.2
COL4A4P53420 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A4P53420 AL596276.2-201ENST00000447525 331 ntBASIC16.32■□□□□ 0.2
COL4A4P53420 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
COL4A4P53420 CFL1-206ENST00000527344 962 ntTSL 2 BASIC16.32■□□□□ 0.2
COL4A4P53420 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC16.32■□□□□ 0.2
COL4A4P53420 TBCB-211ENST00000589996 724 ntTSL 3 BASIC16.32■□□□□ 0.2
COL4A4P53420 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC16.32■□□□□ 0.2
COL4A4P53420 AC090616.6-203ENST00000579186 1945 ntBASIC16.32■□□□□ 0.2
COL4A4P53420 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A4P53420 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A4P53420 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A4P53420 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A4P53420 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A4P53420 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
COL4A4P53420 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A4P53420 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A4P53420 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A4P53420 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A4P53420 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A4P53420 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A4P53420 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A4P53420 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A4P53420 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A4P53420 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A4P53420 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A4P53420 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A4P53420 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A4P53420 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A4P53420 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC16.31■□□□□ 0.2
COL4A4P53420 TPM3P8-201ENST00000330554 643 ntBASIC16.31■□□□□ 0.2
COL4A4P53420 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC16.31■□□□□ 0.2
COL4A4P53420 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC16.31■□□□□ 0.2
COL4A4P53420 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC16.31■□□□□ 0.2
COL4A4P53420 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A4P53420 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC16.31■□□□□ 0.2
COL4A4P53420 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A4P53420 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A4P53420 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms