Protein–RNA interactions for Protein: P49450

CENPA, Histone H3-like centromeric protein A, humanhuman

Predictions only

Length 140 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CENPAP49450 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CENPAP49450 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CENPAP49450 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CENPAP49450 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CENPAP49450 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
CENPAP49450 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CENPAP49450 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CENPAP49450 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.27□□□□□ -0.12
CENPAP49450 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC14.27□□□□□ -0.12
CENPAP49450 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
CENPAP49450 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.27□□□□□ -0.12
CENPAP49450 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
CENPAP49450 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CENPAP49450 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.12
CENPAP49450 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
CENPAP49450 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
CENPAP49450 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC14.27□□□□□ -0.12
CENPAP49450 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CENPAP49450 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CENPAP49450 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.27□□□□□ -0.12
CENPAP49450 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CENPAP49450 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CENPAP49450 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CENPAP49450 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CENPAP49450 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
CENPAP49450 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CENPAP49450 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
CENPAP49450 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CENPAP49450 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC14.27□□□□□ -0.13
CENPAP49450 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CENPAP49450 RN7SL589P-201ENST00000481268 310 ntBASIC14.27□□□□□ -0.13
CENPAP49450 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC14.27□□□□□ -0.13
CENPAP49450 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC14.27□□□□□ -0.13
CENPAP49450 POLD2P1-201ENST00000511220 997 ntBASIC14.27□□□□□ -0.13
CENPAP49450 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC14.27□□□□□ -0.13
CENPAP49450 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC14.27□□□□□ -0.13
CENPAP49450 AC040169.1-201ENST00000565382 521 ntBASIC14.27□□□□□ -0.13
CENPAP49450 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC14.27□□□□□ -0.13
CENPAP49450 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC14.27□□□□□ -0.13
CENPAP49450 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC14.27□□□□□ -0.13
CENPAP49450 AC008267.7-201ENST00000624570 1194 ntBASIC14.27□□□□□ -0.13
CENPAP49450 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC14.27□□□□□ -0.13
CENPAP49450 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC14.27□□□□□ -0.13
CENPAP49450 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
CENPAP49450 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CENPAP49450 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CENPAP49450 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CENPAP49450 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CENPAP49450 AC013268.4-201ENST00000637413 2228 ntBASIC14.27□□□□□ -0.13
CENPAP49450 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
CENPAP49450 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
CENPAP49450 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
CENPAP49450 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CENPAP49450 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CENPAP49450 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CENPAP49450 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CENPAP49450 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CENPAP49450 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
CENPAP49450 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC14.27□□□□□ -0.13
CENPAP49450 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CENPAP49450 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CENPAP49450 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CENPAP49450 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CENPAP49450 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CENPAP49450 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC14.26□□□□□ -0.13
CENPAP49450 PPT1-215ENST00000641471 2368 ntBASIC14.26□□□□□ -0.13
CENPAP49450 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CENPAP49450 SSR4P1-203ENST00000599569 2260 ntBASIC14.26□□□□□ -0.13
CENPAP49450 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC14.26□□□□□ -0.13
CENPAP49450 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC14.26□□□□□ -0.13
CENPAP49450 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CENPAP49450 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CENPAP49450 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CENPAP49450 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CENPAP49450 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CENPAP49450 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.26□□□□□ -0.13
CENPAP49450 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CENPAP49450 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CENPAP49450 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CENPAP49450 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CENPAP49450 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CENPAP49450 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CENPAP49450 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CENPAP49450 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CENPAP49450 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CENPAP49450 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CENPAP49450 AC004987.2-201ENST00000395959 1148 ntBASIC14.26□□□□□ -0.13
CENPAP49450 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC14.26□□□□□ -0.13
CENPAP49450 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CENPAP49450 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC14.26□□□□□ -0.13
CENPAP49450 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CENPAP49450 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC14.26□□□□□ -0.13
CENPAP49450 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC14.26□□□□□ -0.13
CENPAP49450 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC14.26□□□□□ -0.13
CENPAP49450 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC14.26□□□□□ -0.13
CENPAP49450 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC14.26□□□□□ -0.13
CENPAP49450 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
CENPAP49450 COX5A-206ENST00000568783 571 ntTSL 3 BASIC14.26□□□□□ -0.13
CENPAP49450 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC14.26□□□□□ -0.13
CENPAP49450 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms