Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LHX1P48742 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.47■□□□□ 0.23
LHX1P48742 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
LHX1P48742 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LHX1P48742 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC16.47■□□□□ 0.23
LHX1P48742 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LHX1P48742 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LHX1P48742 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LHX1P48742 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LHX1P48742 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LHX1P48742 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LHX1P48742 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LHX1P48742 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
LHX1P48742 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC16.47■□□□□ 0.23
LHX1P48742 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
LHX1P48742 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LHX1P48742 OR8S1-201ENST00000310194 1080 ntBASIC16.47■□□□□ 0.23
LHX1P48742 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
LHX1P48742 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
LHX1P48742 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
LHX1P48742 TMEM14DP-201ENST00000422205 345 ntBASIC16.47■□□□□ 0.23
LHX1P48742 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LHX1P48742 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LHX1P48742 GPR53P-205ENST00000457298 1084 ntBASIC16.47■□□□□ 0.23
LHX1P48742 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
LHX1P48742 SLC25A47P1-201ENST00000531577 414 ntBASIC16.47■□□□□ 0.23
LHX1P48742 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC16.47■□□□□ 0.23
LHX1P48742 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC16.47■□□□□ 0.23
LHX1P48742 AC233724.13-201ENST00000598383 410 ntBASIC16.47■□□□□ 0.23
LHX1P48742 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LHX1P48742 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.47■□□□□ 0.23
LHX1P48742 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LHX1P48742 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.47■□□□□ 0.23
LHX1P48742 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LHX1P48742 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.47■□□□□ 0.23
LHX1P48742 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
LHX1P48742 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LHX1P48742 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LHX1P48742 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
LHX1P48742 AC090616.6-203ENST00000579186 1945 ntBASIC16.47■□□□□ 0.23
LHX1P48742 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LHX1P48742 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
LHX1P48742 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LHX1P48742 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LHX1P48742 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
LHX1P48742 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
LHX1P48742 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC16.46■□□□□ 0.23
LHX1P48742 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
LHX1P48742 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LHX1P48742 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
LHX1P48742 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
LHX1P48742 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
LHX1P48742 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
LHX1P48742 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LHX1P48742 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LHX1P48742 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.46■□□□□ 0.23
LHX1P48742 AC009090.5-201ENST00000624886 2285 ntBASIC16.46■□□□□ 0.23
LHX1P48742 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LHX1P48742 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LHX1P48742 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LHX1P48742 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC16.46■□□□□ 0.23
LHX1P48742 MGST3-203ENST00000367885 680 ntTSL 2 BASIC16.46■□□□□ 0.23
LHX1P48742 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.23
LHX1P48742 BAATP1-201ENST00000412284 1225 ntBASIC16.46■□□□□ 0.23
LHX1P48742 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LHX1P48742 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC16.46■□□□□ 0.23
LHX1P48742 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC16.46■□□□□ 0.23
LHX1P48742 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC16.46■□□□□ 0.23
LHX1P48742 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LHX1P48742 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC16.46■□□□□ 0.23
LHX1P48742 AC093433.1-201ENST00000458048 571 ntBASIC16.46■□□□□ 0.23
LHX1P48742 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LHX1P48742 USP32P1-208ENST00000506594 1164 ntBASIC16.46■□□□□ 0.23
LHX1P48742 AP001582.1-201ENST00000525856 295 ntBASIC16.46■□□□□ 0.23
LHX1P48742 AC068587.3-201ENST00000526613 355 ntBASIC16.46■□□□□ 0.23
LHX1P48742 PUDP-206ENST00000540122 825 ntTSL 2 BASIC16.46■□□□□ 0.23
LHX1P48742 KRT17P8-201ENST00000540749 863 ntBASIC16.46■□□□□ 0.23
LHX1P48742 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC16.46■□□□□ 0.23
LHX1P48742 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC16.46■□□□□ 0.23
LHX1P48742 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.46■□□□□ 0.23
LHX1P48742 INO80C-210ENST00000590757 595 ntTSL 2 BASIC16.46■□□□□ 0.23
LHX1P48742 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC16.46■□□□□ 0.23
LHX1P48742 BX539320.1-201ENST00000623759 877 ntBASIC16.46■□□□□ 0.23
LHX1P48742 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.46■□□□□ 0.23
LHX1P48742 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
LHX1P48742 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LHX1P48742 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LHX1P48742 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
LHX1P48742 AC092850.2-201ENST00000623821 2697 ntBASIC16.46■□□□□ 0.23
LHX1P48742 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
LHX1P48742 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
LHX1P48742 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
LHX1P48742 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
LHX1P48742 USE1-206ENST00000595101 1776 ntTSL 2 BASIC16.46■□□□□ 0.22
LHX1P48742 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
LHX1P48742 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LHX1P48742 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LHX1P48742 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC16.45■□□□□ 0.22
LHX1P48742 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.45■□□□□ 0.22
LHX1P48742 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms