Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC13.84□□□□□ -0.19
SOX2P48431 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC13.84□□□□□ -0.19
SOX2P48431 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC13.84□□□□□ -0.19
SOX2P48431 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC13.84□□□□□ -0.19
SOX2P48431 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC13.84□□□□□ -0.19
SOX2P48431 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
SOX2P48431 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC13.84□□□□□ -0.19
SOX2P48431 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SOX2P48431 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.19
SOX2P48431 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
SOX2P48431 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC13.83□□□□□ -0.19
SOX2P48431 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC13.83□□□□□ -0.19
SOX2P48431 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
SOX2P48431 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC13.83□□□□□ -0.19
SOX2P48431 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.19
SOX2P48431 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC13.83□□□□□ -0.19
SOX2P48431 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
SOX2P48431 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC13.83□□□□□ -0.19
SOX2P48431 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
SOX2P48431 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC13.83□□□□□ -0.2
SOX2P48431 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SOX2P48431 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
SOX2P48431 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SOX2P48431 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SOX2P48431 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SOX2P48431 STRN-202ENST00000379213 2254 ntTSL 5 BASIC13.83□□□□□ -0.2
SOX2P48431 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SOX2P48431 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SOX2P48431 AC015656.1-201ENST00000624209 3578 ntBASIC13.83□□□□□ -0.2
SOX2P48431 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SOX2P48431 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC13.83□□□□□ -0.2
SOX2P48431 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SOX2P48431 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
SOX2P48431 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
SOX2P48431 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC13.83□□□□□ -0.2
SOX2P48431 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SOX2P48431 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SOX2P48431 AP001005.1-201ENST00000571755 1248 ntBASIC13.83□□□□□ -0.2
SOX2P48431 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC13.83□□□□□ -0.2
SOX2P48431 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC13.83□□□□□ -0.2
SOX2P48431 AC068137.2-201ENST00000605408 478 ntBASIC13.83□□□□□ -0.2
SOX2P48431 AC064836.3-201ENST00000607928 673 ntBASIC13.83□□□□□ -0.2
SOX2P48431 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC13.83□□□□□ -0.2
SOX2P48431 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
SOX2P48431 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SOX2P48431 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC13.83□□□□□ -0.2
SOX2P48431 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SOX2P48431 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SOX2P48431 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC13.83□□□□□ -0.2
SOX2P48431 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
SOX2P48431 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC13.83□□□□□ -0.2
SOX2P48431 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
SOX2P48431 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SOX2P48431 BSG-215ENST00000618006 1329 ntTSL 2 BASIC13.83□□□□□ -0.2
SOX2P48431 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SOX2P48431 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SOX2P48431 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC13.83□□□□□ -0.2
SOX2P48431 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SOX2P48431 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SOX2P48431 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
SOX2P48431 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC13.83□□□□□ -0.2
SOX2P48431 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SOX2P48431 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SOX2P48431 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SOX2P48431 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
SOX2P48431 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SOX2P48431 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SOX2P48431 INTS4P1-203ENST00000641008 3683 ntBASIC13.82□□□□□ -0.2
SOX2P48431 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
SOX2P48431 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC13.82□□□□□ -0.2
SOX2P48431 FGD5P1-202ENST00000614866 2498 ntBASIC13.82□□□□□ -0.2
SOX2P48431 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
SOX2P48431 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SOX2P48431 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SOX2P48431 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SOX2P48431 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC13.82□□□□□ -0.2
SOX2P48431 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SOX2P48431 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
SOX2P48431 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SOX2P48431 NME2-201ENST00000393183 568 ntTSL 2 BASIC13.82□□□□□ -0.2
SOX2P48431 AC004987.2-201ENST00000395959 1148 ntBASIC13.82□□□□□ -0.2
SOX2P48431 MRPL3P1-201ENST00000400109 1033 ntBASIC13.82□□□□□ -0.2
SOX2P48431 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
SOX2P48431 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC13.82□□□□□ -0.2
SOX2P48431 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC13.82□□□□□ -0.2
SOX2P48431 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC13.82□□□□□ -0.2
SOX2P48431 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC13.82□□□□□ -0.2
SOX2P48431 AC079776.4-201ENST00000511039 504 ntBASIC13.82□□□□□ -0.2
SOX2P48431 SMN2-210ENST00000511812 867 ntTSL 2 BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms