Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 LHX6-205ENST00000464484 666 ntTSL 2 BASIC14.78□□□□□ -0.04
SOX3P41225 OARD1-208ENST00000469104 704 ntTSL 2 BASIC14.78□□□□□ -0.04
SOX3P41225 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.78□□□□□ -0.04
SOX3P41225 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.78□□□□□ -0.04
SOX3P41225 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.78□□□□□ -0.04
SOX3P41225 LINC02560-201ENST00000596379 459 ntBASIC14.78□□□□□ -0.04
SOX3P41225 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC14.78□□□□□ -0.04
SOX3P41225 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
SOX3P41225 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC14.78□□□□□ -0.04
SOX3P41225 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
SOX3P41225 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
SOX3P41225 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
SOX3P41225 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
SOX3P41225 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
SOX3P41225 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC14.78□□□□□ -0.04
SOX3P41225 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
SOX3P41225 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
SOX3P41225 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 FAM45BP-202ENST00000592932 1624 ntBASIC14.77□□□□□ -0.04
SOX3P41225 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SOX3P41225 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC14.77□□□□□ -0.04
SOX3P41225 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
SOX3P41225 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
SOX3P41225 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
SOX3P41225 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SOX3P41225 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
SOX3P41225 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
SOX3P41225 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SOX3P41225 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SOX3P41225 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SOX3P41225 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
SOX3P41225 AC004987.2-201ENST00000395959 1148 ntBASIC14.77□□□□□ -0.05
SOX3P41225 HAUS4P1-201ENST00000406739 1145 ntBASIC14.77□□□□□ -0.05
SOX3P41225 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC14.77□□□□□ -0.05
SOX3P41225 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
SOX3P41225 SERBP1P5-201ENST00000510079 1181 ntBASIC14.77□□□□□ -0.05
SOX3P41225 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC14.77□□□□□ -0.05
SOX3P41225 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SOX3P41225 AC138761.1-201ENST00000584393 385 ntBASIC14.77□□□□□ -0.05
SOX3P41225 MIR6069-201ENST00000620069 79 ntBASIC14.77□□□□□ -0.05
SOX3P41225 AC008761.3-201ENST00000624803 892 ntBASIC14.77□□□□□ -0.05
SOX3P41225 SNX18-202ENST00000343017 3140 ntBASIC14.77□□□□□ -0.05
SOX3P41225 AC068587.6-202ENST00000641839 5619 ntBASIC14.77□□□□□ -0.05
SOX3P41225 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SOX3P41225 C1R-202ENST00000536053 2347 ntTSL 2 BASIC14.77□□□□□ -0.05
SOX3P41225 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
SOX3P41225 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC14.77□□□□□ -0.05
SOX3P41225 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SOX3P41225 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC14.77□□□□□ -0.05
SOX3P41225 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SOX3P41225 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
SOX3P41225 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
SOX3P41225 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
SOX3P41225 AC006486.2-201ENST00000624246 2199 ntBASIC14.77□□□□□ -0.05
SOX3P41225 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
SOX3P41225 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
SOX3P41225 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC14.76□□□□□ -0.05
SOX3P41225 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
SOX3P41225 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SOX3P41225 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SOX3P41225 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC14.76□□□□□ -0.05
SOX3P41225 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
SOX3P41225 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SOX3P41225 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
SOX3P41225 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
SOX3P41225 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SOX3P41225 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SOX3P41225 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC14.76□□□□□ -0.05
SOX3P41225 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SOX3P41225 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
SOX3P41225 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SOX3P41225 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SOX3P41225 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SOX3P41225 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SOX3P41225 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
SOX3P41225 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.76□□□□□ -0.05
SOX3P41225 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.76□□□□□ -0.05
SOX3P41225 TERF1P3-201ENST00000505638 1227 ntBASIC14.76□□□□□ -0.05
SOX3P41225 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SOX3P41225 AC044860.1-202ENST00000559481 777 ntBASIC14.76□□□□□ -0.05
SOX3P41225 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC14.76□□□□□ -0.05
SOX3P41225 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.76□□□□□ -0.05
SOX3P41225 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC14.76□□□□□ -0.05
SOX3P41225 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.76□□□□□ -0.05
SOX3P41225 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
SOX3P41225 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC14.76□□□□□ -0.05
SOX3P41225 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC14.76□□□□□ -0.05
SOX3P41225 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
SOX3P41225 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC14.76□□□□□ -0.05
SOX3P41225 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
SOX3P41225 AC067930.6-201ENST00000623257 4947 ntBASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms