Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC15□□□□□ -0.01
MSX2P35548 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
MSX2P35548 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
MSX2P35548 NME2-201ENST00000393183 568 ntTSL 2 BASIC15□□□□□ -0.01
MSX2P35548 TSPY19P-201ENST00000418461 509 ntBASIC15□□□□□ -0.01
MSX2P35548 TSPY18P-201ENST00000441642 509 ntBASIC15□□□□□ -0.01
MSX2P35548 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC15□□□□□ -0.01
MSX2P35548 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15□□□□□ -0.01
MSX2P35548 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
MSX2P35548 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15□□□□□ -0.01
MSX2P35548 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15□□□□□ -0.01
MSX2P35548 AC008735.5-201ENST00000623544 497 ntBASIC15□□□□□ -0.01
MSX2P35548 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15□□□□□ -0.01
MSX2P35548 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC15□□□□□ -0.01
MSX2P35548 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC15□□□□□ -0.01
MSX2P35548 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC15□□□□□ -0.01
MSX2P35548 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC15□□□□□ -0.01
MSX2P35548 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
MSX2P35548 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSX2P35548 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSX2P35548 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSX2P35548 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
MSX2P35548 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
MSX2P35548 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
MSX2P35548 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC14.99□□□□□ -0.01
MSX2P35548 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.99□□□□□ -0.01
MSX2P35548 CICP11-201ENST00000434745 2827 ntBASIC14.99□□□□□ -0.01
MSX2P35548 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSX2P35548 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.99□□□□□ -0.01
MSX2P35548 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
MSX2P35548 PMS2P7-201ENST00000506558 1336 ntBASIC14.99□□□□□ -0.01
MSX2P35548 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSX2P35548 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC14.99□□□□□ -0.01
MSX2P35548 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSX2P35548 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.99□□□□□ -0.01
MSX2P35548 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSX2P35548 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
MSX2P35548 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
MSX2P35548 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSX2P35548 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSX2P35548 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSX2P35548 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
MSX2P35548 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
MSX2P35548 RAC2-202ENST00000401529 569 ntTSL 4 BASIC14.99□□□□□ -0.01
MSX2P35548 HNRNPDP1-201ENST00000439535 754 ntBASIC14.99□□□□□ -0.01
MSX2P35548 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
MSX2P35548 SAPCD2P3-201ENST00000455031 850 ntBASIC14.99□□□□□ -0.01
MSX2P35548 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
MSX2P35548 AC105339.3-201ENST00000560043 636 ntBASIC14.99□□□□□ -0.01
MSX2P35548 CD7-202ENST00000578509 925 ntTSL 3 BASIC14.99□□□□□ -0.01
MSX2P35548 MIR3652-201ENST00000579335 131 ntBASIC14.99□□□□□ -0.01
MSX2P35548 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC14.99□□□□□ -0.01
MSX2P35548 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
MSX2P35548 AC005593.1-201ENST00000624894 515 ntBASIC14.99□□□□□ -0.01
MSX2P35548 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
MSX2P35548 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSX2P35548 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSX2P35548 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.99□□□□□ -0.01
MSX2P35548 BX640514.1-201ENST00000583223 1918 ntBASIC14.99□□□□□ -0.01
MSX2P35548 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.99□□□□□ -0.01
MSX2P35548 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
MSX2P35548 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSX2P35548 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSX2P35548 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC14.99□□□□□ -0.01
MSX2P35548 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC14.99□□□□□ -0.01
MSX2P35548 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC14.99□□□□□ -0.01
MSX2P35548 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSX2P35548 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSX2P35548 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC14.99□□□□□ -0.01
MSX2P35548 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
MSX2P35548 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
MSX2P35548 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
MSX2P35548 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC14.99□□□□□ -0.01
MSX2P35548 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSX2P35548 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
MSX2P35548 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSX2P35548 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSX2P35548 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
MSX2P35548 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSX2P35548 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC14.98□□□□□ -0.01
MSX2P35548 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
MSX2P35548 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSX2P35548 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSX2P35548 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC14.98□□□□□ -0.01
MSX2P35548 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSX2P35548 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
MSX2P35548 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms