Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC14.35□□□□□ -0.11
MSX1P28360 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
MSX1P28360 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX1P28360 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX1P28360 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
MSX1P28360 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX1P28360 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
MSX1P28360 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
MSX1P28360 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX1P28360 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC14.35□□□□□ -0.11
MSX1P28360 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
MSX1P28360 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX1P28360 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC14.35□□□□□ -0.11
MSX1P28360 LINC02199-201ENST00000506655 2702 ntBASIC14.35□□□□□ -0.11
MSX1P28360 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC14.34□□□□□ -0.11
MSX1P28360 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.34□□□□□ -0.11
MSX1P28360 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX1P28360 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX1P28360 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX1P28360 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC14.34□□□□□ -0.11
MSX1P28360 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.34□□□□□ -0.11
MSX1P28360 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
MSX1P28360 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX1P28360 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.34□□□□□ -0.11
MSX1P28360 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.34□□□□□ -0.11
MSX1P28360 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX1P28360 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
MSX1P28360 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.34□□□□□ -0.11
MSX1P28360 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX1P28360 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX1P28360 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX1P28360 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX1P28360 AC092850.2-201ENST00000623821 2697 ntBASIC14.34□□□□□ -0.11
MSX1P28360 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX1P28360 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX1P28360 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX1P28360 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC14.34□□□□□ -0.11
MSX1P28360 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX1P28360 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
MSX1P28360 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.34□□□□□ -0.11
MSX1P28360 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
MSX1P28360 AL512384.1-201ENST00000406683 331 ntBASIC14.34□□□□□ -0.11
MSX1P28360 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.34□□□□□ -0.11
MSX1P28360 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
MSX1P28360 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC14.34□□□□□ -0.11
MSX1P28360 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.34□□□□□ -0.11
MSX1P28360 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC14.34□□□□□ -0.11
MSX1P28360 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.34□□□□□ -0.11
MSX1P28360 AC011495.1-201ENST00000498085 584 ntBASIC14.34□□□□□ -0.11
MSX1P28360 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.34□□□□□ -0.11
MSX1P28360 HILS1-202ENST00000545329 423 ntBASIC14.34□□□□□ -0.11
MSX1P28360 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX1P28360 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX1P28360 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.34□□□□□ -0.11
MSX1P28360 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX1P28360 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX1P28360 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
MSX1P28360 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
MSX1P28360 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC14.34□□□□□ -0.11
MSX1P28360 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX1P28360 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
MSX1P28360 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX1P28360 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX1P28360 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
MSX1P28360 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
MSX1P28360 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX1P28360 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
MSX1P28360 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC14.34□□□□□ -0.11
MSX1P28360 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
MSX1P28360 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC14.34□□□□□ -0.11
MSX1P28360 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX1P28360 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX1P28360 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.33□□□□□ -0.11
MSX1P28360 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
MSX1P28360 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
MSX1P28360 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
MSX1P28360 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX1P28360 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
MSX1P28360 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC14.33□□□□□ -0.12
MSX1P28360 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
MSX1P28360 PRAL-201ENST00000624952 3286 ntBASIC14.33□□□□□ -0.12
MSX1P28360 HLA-DQB2-231ENST00000435145 2026 ntBASIC14.33□□□□□ -0.12
MSX1P28360 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC14.33□□□□□ -0.12
MSX1P28360 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
MSX1P28360 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC14.33□□□□□ -0.12
MSX1P28360 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX1P28360 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
MSX1P28360 AL133267.1-201ENST00000398220 340 ntBASIC14.33□□□□□ -0.12
MSX1P28360 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC14.33□□□□□ -0.12
MSX1P28360 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC14.33□□□□□ -0.12
MSX1P28360 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.33□□□□□ -0.12
MSX1P28360 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.33□□□□□ -0.12
MSX1P28360 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC14.33□□□□□ -0.12
MSX1P28360 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
MSX1P28360 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC14.33□□□□□ -0.12
MSX1P28360 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC14.33□□□□□ -0.12
MSX1P28360 DOC2GP-202ENST00000514950 1163 ntBASIC14.33□□□□□ -0.12
MSX1P28360 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC14.33□□□□□ -0.12
MSX1P28360 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC14.33□□□□□ -0.12
MSX1P28360 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms