Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC11.99□□□□□ -0.49
HLA-DMBP28068 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC11.99□□□□□ -0.49
HLA-DMBP28068 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC11.99□□□□□ -0.49
HLA-DMBP28068 AC004835.2-201ENST00000603762 682 ntBASIC11.99□□□□□ -0.49
HLA-DMBP28068 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC11.99□□□□□ -0.49
HLA-DMBP28068 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC11.99□□□□□ -0.49
HLA-DMBP28068 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
HLA-DMBP28068 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
HLA-DMBP28068 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC11.99□□□□□ -0.49
HLA-DMBP28068 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 POR-201ENST00000394893 2532 ntTSL 5 BASIC11.99□□□□□ -0.49
HLA-DMBP28068 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC11.99□□□□□ -0.49
HLA-DMBP28068 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
HLA-DMBP28068 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DMBP28068 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC11.99□□□□□ -0.49
HLA-DMBP28068 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 C1R-202ENST00000536053 2347 ntTSL 2 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 KRT8P37-201ENST00000451609 1420 ntBASIC11.98□□□□□ -0.49
HLA-DMBP28068 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 RN7SL589P-201ENST00000481268 310 ntBASIC11.98□□□□□ -0.49
HLA-DMBP28068 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 FAM86C2P-203ENST00000528684 1004 ntBASIC11.98□□□□□ -0.49
HLA-DMBP28068 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 SLC25A39P2-201ENST00000537614 270 ntBASIC11.98□□□□□ -0.49
HLA-DMBP28068 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 LINC01225-203ENST00000563550 1244 ntBASIC11.98□□□□□ -0.49
HLA-DMBP28068 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 SSH2-211ENST00000590153 570 ntTSL 4 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 AL450472.2-201ENST00000603663 1156 ntBASIC11.98□□□□□ -0.49
HLA-DMBP28068 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 MYO15B-237ENST00000642007 4893 ntBASIC11.98□□□□□ -0.49
HLA-DMBP28068 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
HLA-DMBP28068 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HLA-DMBP28068 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DMBP28068 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC11.97□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms