Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
VIMP08670 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
VIMP08670 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
VIMP08670 AC136759.1-202ENST00000530858 2194 ntBASIC15.8■□□□□ 0.12
VIMP08670 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
VIMP08670 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VIMP08670 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC15.8■□□□□ 0.12
VIMP08670 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VIMP08670 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VIMP08670 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VIMP08670 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC15.79■□□□□ 0.12
VIMP08670 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VIMP08670 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VIMP08670 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC15.79■□□□□ 0.12
VIMP08670 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
VIMP08670 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VIMP08670 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VIMP08670 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VIMP08670 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VIMP08670 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC15.79■□□□□ 0.12
VIMP08670 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VIMP08670 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
VIMP08670 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC15.79■□□□□ 0.12
VIMP08670 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
VIMP08670 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC15.79■□□□□ 0.12
VIMP08670 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
VIMP08670 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC15.79■□□□□ 0.12
VIMP08670 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC15.79■□□□□ 0.12
VIMP08670 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC15.79■□□□□ 0.12
VIMP08670 RNU1-129P-201ENST00000384064 167 ntBASIC15.79■□□□□ 0.12
VIMP08670 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.79■□□□□ 0.12
VIMP08670 ELK2BP-201ENST00000415014 1224 ntBASIC15.79■□□□□ 0.12
VIMP08670 FAM8A3P-201ENST00000427218 844 ntBASIC15.79■□□□□ 0.12
VIMP08670 AL645939.2-201ENST00000427340 991 ntBASIC15.79■□□□□ 0.12
VIMP08670 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC15.79■□□□□ 0.12
VIMP08670 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.79■□□□□ 0.12
VIMP08670 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC15.79■□□□□ 0.12
VIMP08670 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC15.79■□□□□ 0.12
VIMP08670 MSRA-206ENST00000521209 814 ntTSL 3 BASIC15.79■□□□□ 0.12
VIMP08670 AP000867.3-201ENST00000524675 377 ntBASIC15.79■□□□□ 0.12
VIMP08670 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC15.79■□□□□ 0.12
VIMP08670 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC15.79■□□□□ 0.12
VIMP08670 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC15.79■□□□□ 0.12
VIMP08670 RMI2-205ENST00000576027 818 ntTSL 2 BASIC15.79■□□□□ 0.12
VIMP08670 MIR4313-201ENST00000580760 101 ntBASIC15.79■□□□□ 0.12
VIMP08670 U1.21-201ENST00000580816 167 ntBASIC15.79■□□□□ 0.12
VIMP08670 MIR4321-201ENST00000592276 80 ntBASIC15.79■□□□□ 0.12
VIMP08670 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VIMP08670 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC15.79■□□□□ 0.12
VIMP08670 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC15.79■□□□□ 0.12
VIMP08670 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VIMP08670 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
VIMP08670 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VIMP08670 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VIMP08670 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.79■□□□□ 0.12
VIMP08670 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC15.79■□□□□ 0.12
VIMP08670 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC15.79■□□□□ 0.12
VIMP08670 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
VIMP08670 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VIMP08670 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VIMP08670 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VIMP08670 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
VIMP08670 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VIMP08670 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC15.79■□□□□ 0.12
VIMP08670 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VIMP08670 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
VIMP08670 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VIMP08670 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
VIMP08670 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC15.78■□□□□ 0.12
VIMP08670 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
VIMP08670 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.78■□□□□ 0.12
VIMP08670 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
VIMP08670 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VIMP08670 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VIMP08670 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VIMP08670 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VIMP08670 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC15.78■□□□□ 0.12
VIMP08670 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VIMP08670 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VIMP08670 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
VIMP08670 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC15.78■□□□□ 0.12
VIMP08670 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VIMP08670 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC15.78■□□□□ 0.12
VIMP08670 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
VIMP08670 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VIMP08670 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
VIMP08670 AC106795.1-205ENST00000512851 1056 ntBASIC15.78■□□□□ 0.12
VIMP08670 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC15.78■□□□□ 0.12
VIMP08670 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
VIMP08670 AC087388.1-201ENST00000571370 1112 ntBASIC15.78■□□□□ 0.12
VIMP08670 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
VIMP08670 AL031055.1-201ENST00000606362 631 ntBASIC15.78■□□□□ 0.12
VIMP08670 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC15.78■□□□□ 0.12
VIMP08670 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC15.78■□□□□ 0.12
VIMP08670 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VIMP08670 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VIMP08670 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC15.78■□□□□ 0.12
VIMP08670 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VIMP08670 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VIMP08670 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms