Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
NKX2-2O95096 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
NKX2-2O95096 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
NKX2-2O95096 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
NKX2-2O95096 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
NKX2-2O95096 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.4□□□□□ -0.1
NKX2-2O95096 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
NKX2-2O95096 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC14.4□□□□□ -0.11
NKX2-2O95096 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC14.4□□□□□ -0.11
NKX2-2O95096 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
NKX2-2O95096 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC14.39□□□□□ -0.11
NKX2-2O95096 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 MROH4P-201ENST00000431302 1578 ntBASIC14.39□□□□□ -0.11
NKX2-2O95096 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
NKX2-2O95096 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
NKX2-2O95096 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
NKX2-2O95096 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
NKX2-2O95096 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
NKX2-2O95096 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
NKX2-2O95096 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC14.39□□□□□ -0.11
NKX2-2O95096 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.39□□□□□ -0.11
NKX2-2O95096 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.39□□□□□ -0.11
NKX2-2O95096 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
NKX2-2O95096 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC14.39□□□□□ -0.11
NKX2-2O95096 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.39□□□□□ -0.11
NKX2-2O95096 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC14.39□□□□□ -0.11
NKX2-2O95096 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.39□□□□□ -0.11
NKX2-2O95096 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.39□□□□□ -0.11
NKX2-2O95096 AC004790.1-201ENST00000612686 536 ntBASIC14.39□□□□□ -0.11
NKX2-2O95096 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.39□□□□□ -0.11
NKX2-2O95096 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.39□□□□□ -0.11
NKX2-2O95096 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.39□□□□□ -0.11
NKX2-2O95096 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC14.39□□□□□ -0.11
NKX2-2O95096 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC14.39□□□□□ -0.11
NKX2-2O95096 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.39□□□□□ -0.11
NKX2-2O95096 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC14.39□□□□□ -0.11
NKX2-2O95096 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
NKX2-2O95096 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
NKX2-2O95096 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.39□□□□□ -0.11
NKX2-2O95096 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC14.39□□□□□ -0.11
NKX2-2O95096 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX2-2O95096 CICP11-201ENST00000434745 2827 ntBASIC14.38□□□□□ -0.11
NKX2-2O95096 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NKX2-2O95096 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.38□□□□□ -0.11
NKX2-2O95096 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NKX2-2O95096 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
NKX2-2O95096 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NKX2-2O95096 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NKX2-2O95096 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.38□□□□□ -0.11
NKX2-2O95096 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.38□□□□□ -0.11
NKX2-2O95096 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC14.38□□□□□ -0.11
NKX2-2O95096 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.38□□□□□ -0.11
NKX2-2O95096 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NKX2-2O95096 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
NKX2-2O95096 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NKX2-2O95096 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.38□□□□□ -0.11
NKX2-2O95096 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NKX2-2O95096 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NKX2-2O95096 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.38□□□□□ -0.11
NKX2-2O95096 MIR770-201ENST00000390219 98 ntBASIC14.38□□□□□ -0.11
NKX2-2O95096 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NKX2-2O95096 AC104457.1-201ENST00000401024 814 ntBASIC14.38□□□□□ -0.11
NKX2-2O95096 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
NKX2-2O95096 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC14.38□□□□□ -0.11
NKX2-2O95096 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.38□□□□□ -0.11
NKX2-2O95096 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms