Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SGCEO43556 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SGCEO43556 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC13.93□□□□□ -0.18
SGCEO43556 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
SGCEO43556 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
SGCEO43556 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SGCEO43556 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
SGCEO43556 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC13.92□□□□□ -0.18
SGCEO43556 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC13.92□□□□□ -0.18
SGCEO43556 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SGCEO43556 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC13.92□□□□□ -0.18
SGCEO43556 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC13.92□□□□□ -0.18
SGCEO43556 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC13.92□□□□□ -0.18
SGCEO43556 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC13.92□□□□□ -0.18
SGCEO43556 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SGCEO43556 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
SGCEO43556 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
SGCEO43556 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SGCEO43556 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
SGCEO43556 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SGCEO43556 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC13.92□□□□□ -0.18
SGCEO43556 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
SGCEO43556 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SGCEO43556 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
SGCEO43556 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC13.92□□□□□ -0.18
SGCEO43556 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SGCEO43556 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC13.92□□□□□ -0.18
SGCEO43556 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
SGCEO43556 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
SGCEO43556 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SGCEO43556 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SGCEO43556 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
SGCEO43556 HNRNPFP1-201ENST00000391730 1133 ntBASIC13.92□□□□□ -0.18
SGCEO43556 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SGCEO43556 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC13.92□□□□□ -0.18
SGCEO43556 RAC2-202ENST00000401529 569 ntTSL 4 BASIC13.92□□□□□ -0.18
SGCEO43556 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC13.92□□□□□ -0.18
SGCEO43556 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC13.92□□□□□ -0.18
SGCEO43556 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SGCEO43556 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SGCEO43556 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC13.92□□□□□ -0.18
SGCEO43556 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
SGCEO43556 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC13.92□□□□□ -0.18
SGCEO43556 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC13.92□□□□□ -0.18
SGCEO43556 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
SGCEO43556 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SGCEO43556 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SGCEO43556 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SGCEO43556 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC13.92□□□□□ -0.18
SGCEO43556 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
SGCEO43556 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
SGCEO43556 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SGCEO43556 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SGCEO43556 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
SGCEO43556 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
SGCEO43556 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
SGCEO43556 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC13.91□□□□□ -0.18
SGCEO43556 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SGCEO43556 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SGCEO43556 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SGCEO43556 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SGCEO43556 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
SGCEO43556 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
SGCEO43556 AC079781.5-202ENST00000641784 3743 ntBASIC13.91□□□□□ -0.18
SGCEO43556 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC13.91□□□□□ -0.18
SGCEO43556 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC13.91□□□□□ -0.18
SGCEO43556 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC13.91□□□□□ -0.18
SGCEO43556 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC13.91□□□□□ -0.18
SGCEO43556 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
SGCEO43556 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SGCEO43556 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC13.91□□□□□ -0.18
SGCEO43556 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SGCEO43556 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC13.91□□□□□ -0.18
SGCEO43556 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC13.91□□□□□ -0.18
SGCEO43556 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SGCEO43556 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SGCEO43556 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SGCEO43556 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC13.91□□□□□ -0.18
SGCEO43556 HLA-J-203ENST00000494367 1087 ntBASIC13.91□□□□□ -0.18
SGCEO43556 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC13.91□□□□□ -0.18
SGCEO43556 AC069262.1-201ENST00000539058 672 ntBASIC13.91□□□□□ -0.18
SGCEO43556 SUOX-214ENST00000551841 906 ntTSL 3 BASIC13.91□□□□□ -0.18
SGCEO43556 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC13.91□□□□□ -0.18
SGCEO43556 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC13.91□□□□□ -0.18
SGCEO43556 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SGCEO43556 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
SGCEO43556 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
SGCEO43556 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SGCEO43556 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SGCEO43556 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
SGCEO43556 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
SGCEO43556 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SGCEO43556 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SGCEO43556 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
SGCEO43556 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SGCEO43556 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SGCEO43556 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC13.91□□□□□ -0.18
SGCEO43556 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SGCEO43556 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC13.91□□□□□ -0.18
SGCEO43556 ILF3-AS1-201ENST00000591501 1983 ntBASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms