Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX3-1Q99801 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX3-1Q99801 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
NKX3-1Q99801 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX3-1Q99801 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX3-1Q99801 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 PARN-202ENST00000420015 2360 ntTSL 2 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
NKX3-1Q99801 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
NKX3-1Q99801 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX3-1Q99801 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
NKX3-1Q99801 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC13.75□□□□□ -0.21
NKX3-1Q99801 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 REXO1L1P-202ENST00000608646 1974 ntBASIC13.74□□□□□ -0.21
NKX3-1Q99801 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 AL136982.4-201ENST00000437689 1740 ntBASIC13.74□□□□□ -0.21
NKX3-1Q99801 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 NMU-202ENST00000505262 693 ntTSL 3 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 AC040169.1-201ENST00000565382 521 ntBASIC13.74□□□□□ -0.21
NKX3-1Q99801 MIR3687-2-201ENST00000577708 61 ntBASIC13.74□□□□□ -0.21
NKX3-1Q99801 AC099522.2-201ENST00000607001 744 ntBASIC13.74□□□□□ -0.21
NKX3-1Q99801 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 AC006538.3-201ENST00000612495 578 ntBASIC13.74□□□□□ -0.21
NKX3-1Q99801 MIR3687-1-201ENST00000614492 61 ntBASIC13.74□□□□□ -0.21
NKX3-1Q99801 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 AC092865.6-201ENST00000642101 219 ntBASIC13.74□□□□□ -0.21
NKX3-1Q99801 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
NKX3-1Q99801 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
NKX3-1Q99801 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
NKX3-1Q99801 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
NKX3-1Q99801 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
NKX3-1Q99801 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
NKX3-1Q99801 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms