Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 AL139094.1-201ENST00000405549 1188 ntBASIC15.12■□□□□ 0.01
VPS13AQ96RL7 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 RPL18AP3-201ENST00000462885 528 ntBASIC15.12■□□□□ 0.01
VPS13AQ96RL7 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
VPS13AQ96RL7 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC15.11■□□□□ 0.01
VPS13AQ96RL7 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.11■□□□□ 0.01
VPS13AQ96RL7 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VPS13AQ96RL7 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VPS13AQ96RL7 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.11■□□□□ 0.01
VPS13AQ96RL7 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC15.11■□□□□ 0.01
VPS13AQ96RL7 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS13AQ96RL7 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS13AQ96RL7 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
VPS13AQ96RL7 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC15.11■□□□□ 0.01
VPS13AQ96RL7 REEP5-205ENST00000504247 480 ntTSL 5 BASIC15.11■□□□□ 0.01
VPS13AQ96RL7 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC15.11■□□□□ 0.01
VPS13AQ96RL7 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC15.11■□□□□ 0.01
VPS13AQ96RL7 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS13AQ96RL7 REXO1L5P-201ENST00000622260 2098 ntBASIC15.11■□□□□ 0.01
VPS13AQ96RL7 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS13AQ96RL7 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.11■□□□□ 0.01
VPS13AQ96RL7 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS13AQ96RL7 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS13AQ96RL7 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
VPS13AQ96RL7 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
VPS13AQ96RL7 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC15.11■□□□□ 0.01
VPS13AQ96RL7 AL358472.3-201ENST00000608147 415 ntBASIC15.11■□□□□ 0.01
VPS13AQ96RL7 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC15.11■□□□□ 0.01
VPS13AQ96RL7 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 ACTBP8-201ENST00000403258 1108 ntBASIC15.1■□□□□ 0.01
VPS13AQ96RL7 POM121L8P-201ENST00000417732 1281 ntBASIC15.1■□□□□ 0.01
VPS13AQ96RL7 POM121L9P-203ENST00000441984 1285 ntBASIC15.1■□□□□ 0.01
VPS13AQ96RL7 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 HPN-206ENST00000597419 1212 ntTSL 5 BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 AC244250.3-201ENST00000620749 366 ntBASIC15.1■□□□□ 0.01
VPS13AQ96RL7 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 KRT8P21-201ENST00000430398 1491 ntBASIC15.1■□□□□ 0.01
VPS13AQ96RL7 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 FAM86KP-201ENST00000509817 987 ntBASIC15.1■□□□□ 0.01
VPS13AQ96RL7 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 WT1-209ENST00000530998 2421 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 LINC01144-201ENST00000626198 1710 ntBASIC15.1■□□□□ 0.01
VPS13AQ96RL7 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS13AQ96RL7 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC15.09■□□□□ 0.01
VPS13AQ96RL7 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms