Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 CYP4F24P-201ENST00000586049 1580 ntBASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 FO393414.2-201ENST00000405153 598 ntBASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 TMEM14DP-201ENST00000422205 345 ntBASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 NEU3-203ENST00000529024 581 ntTSL 3 BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 NAA38-206ENST00000576384 424 ntTSL 2 BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 WFDC1-204ENST00000613603 549 ntBASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 MIR6799-201ENST00000620297 69 ntBASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC18.18■□□□□ 0.5
CCDC144BQ3MJ40 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 GSN-203ENST00000373808 2664 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 CICP24-201ENST00000605464 2705 ntBASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 AC022210.1-201ENST00000449856 793 ntBASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 TIMM17BP1-201ENST00000545713 516 ntBASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 RRP7BP-205ENST00000566851 833 ntBASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 TMEM261P1-201ENST00000604899 340 ntBASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 AL365330.1-201ENST00000607459 531 ntBASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 Six3os1_5.1-201ENST00000611000 271 ntBASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 LINC01144-201ENST00000626198 1710 ntBASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC144BQ3MJ40 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 C1R-202ENST00000536053 2347 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 SNX18-202ENST00000343017 3140 ntBASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC144BQ3MJ40 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms