Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC16.13■□□□□ 0.17
CHD9Q3L8U1 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CHD9Q3L8U1 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC16.13■□□□□ 0.17
CHD9Q3L8U1 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHD9Q3L8U1 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.13■□□□□ 0.17
CHD9Q3L8U1 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.13■□□□□ 0.17
CHD9Q3L8U1 RPS15-201ENST00000233609 534 ntTSL 2 BASIC16.13■□□□□ 0.17
CHD9Q3L8U1 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CHD9Q3L8U1 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CHD9Q3L8U1 RN7SL258P-201ENST00000478664 300 ntBASIC16.13■□□□□ 0.17
CHD9Q3L8U1 MIR3677-201ENST00000578964 60 ntBASIC16.13■□□□□ 0.17
CHD9Q3L8U1 RPS15-205ENST00000586686 562 ntTSL 5 BASIC16.13■□□□□ 0.17
CHD9Q3L8U1 RPS15-208ENST00000591804 711 ntTSL 5 BASIC16.13■□□□□ 0.17
CHD9Q3L8U1 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHD9Q3L8U1 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHD9Q3L8U1 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHD9Q3L8U1 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CHD9Q3L8U1 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHD9Q3L8U1 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHD9Q3L8U1 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHD9Q3L8U1 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHD9Q3L8U1 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC16.13■□□□□ 0.17
CHD9Q3L8U1 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.13■□□□□ 0.17
CHD9Q3L8U1 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.13■□□□□ 0.17
CHD9Q3L8U1 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CHD9Q3L8U1 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.13■□□□□ 0.17
CHD9Q3L8U1 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 AL357563.1-201ENST00000404728 395 ntBASIC16.12■□□□□ 0.17
CHD9Q3L8U1 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 AC027139.1-201ENST00000565286 951 ntBASIC16.12■□□□□ 0.17
CHD9Q3L8U1 AC008805.1-201ENST00000590892 364 ntBASIC16.12■□□□□ 0.17
CHD9Q3L8U1 AL161773.1-201ENST00000624845 863 ntBASIC16.12■□□□□ 0.17
CHD9Q3L8U1 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 TUBB8P8-201ENST00000458717 1058 ntBASIC16.12■□□□□ 0.17
CHD9Q3L8U1 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 AC027237.1-201ENST00000560942 655 ntBASIC16.12■□□□□ 0.17
CHD9Q3L8U1 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 AC138696.2-201ENST00000607376 223 ntBASIC16.12■□□□□ 0.17
CHD9Q3L8U1 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CHD9Q3L8U1 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 KLF2P1-201ENST00000447438 1042 ntBASIC16.11■□□□□ 0.17
CHD9Q3L8U1 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 AL603764.1-201ENST00000636452 321 ntBASIC16.11■□□□□ 0.17
CHD9Q3L8U1 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 FKBP4P6-201ENST00000457486 1332 ntBASIC16.11■□□□□ 0.17
CHD9Q3L8U1 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 AC124067.4-201ENST00000519691 2379 ntBASIC16.11■□□□□ 0.17
CHD9Q3L8U1 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 HLA-K-203ENST00000430151 1046 ntBASIC16.11■□□□□ 0.17
CHD9Q3L8U1 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CHD9Q3L8U1 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms