Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PKNOX1P55347 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
PKNOX1P55347 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PKNOX1P55347 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.43■□□□□ 0.06
PKNOX1P55347 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC15.43■□□□□ 0.06
PKNOX1P55347 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.43■□□□□ 0.06
PKNOX1P55347 KRT8P48-201ENST00000515599 1220 ntBASIC15.43■□□□□ 0.06
PKNOX1P55347 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC15.43■□□□□ 0.06
PKNOX1P55347 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC15.43■□□□□ 0.06
PKNOX1P55347 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.43■□□□□ 0.06
PKNOX1P55347 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC15.43■□□□□ 0.06
PKNOX1P55347 AC084121.4-201ENST00000641598 221 ntBASIC15.43■□□□□ 0.06
PKNOX1P55347 AF228730.8-201ENST00000642140 221 ntBASIC15.43■□□□□ 0.06
PKNOX1P55347 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.43■□□□□ 0.06
PKNOX1P55347 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PKNOX1P55347 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.43■□□□□ 0.06
PKNOX1P55347 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PKNOX1P55347 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
PKNOX1P55347 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
PKNOX1P55347 LINC00528-201ENST00000600723 2160 ntBASIC15.43■□□□□ 0.06
PKNOX1P55347 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
PKNOX1P55347 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PKNOX1P55347 AC009090.5-201ENST00000624886 2285 ntBASIC15.43■□□□□ 0.06
PKNOX1P55347 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.43■□□□□ 0.06
PKNOX1P55347 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC15.43■□□□□ 0.06
PKNOX1P55347 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PKNOX1P55347 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PKNOX1P55347 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
PKNOX1P55347 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.43■□□□□ 0.06
PKNOX1P55347 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
PKNOX1P55347 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PKNOX1P55347 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.43■□□□□ 0.06
PKNOX1P55347 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PKNOX1P55347 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
PKNOX1P55347 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
PKNOX1P55347 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PKNOX1P55347 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PKNOX1P55347 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PKNOX1P55347 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC15.42■□□□□ 0.06
PKNOX1P55347 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PKNOX1P55347 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
PKNOX1P55347 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.42■□□□□ 0.06
PKNOX1P55347 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PKNOX1P55347 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PKNOX1P55347 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PKNOX1P55347 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PKNOX1P55347 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
PKNOX1P55347 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
PKNOX1P55347 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
PKNOX1P55347 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC15.42■□□□□ 0.06
PKNOX1P55347 YBX2P1-201ENST00000394192 760 ntBASIC15.42■□□□□ 0.06
PKNOX1P55347 AL645939.2-201ENST00000427340 991 ntBASIC15.42■□□□□ 0.06
PKNOX1P55347 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.42■□□□□ 0.06
PKNOX1P55347 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC15.42■□□□□ 0.06
PKNOX1P55347 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.42■□□□□ 0.06
PKNOX1P55347 MAX-210ENST00000555419 765 ntTSL 5 BASIC15.42■□□□□ 0.06
PKNOX1P55347 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.42■□□□□ 0.06
PKNOX1P55347 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC15.42■□□□□ 0.06
PKNOX1P55347 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC15.42■□□□□ 0.06
PKNOX1P55347 AC007191.1-201ENST00000623179 2995 ntBASIC15.42■□□□□ 0.06
PKNOX1P55347 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.42■□□□□ 0.06
PKNOX1P55347 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PKNOX1P55347 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PKNOX1P55347 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PKNOX1P55347 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC15.42■□□□□ 0.06
PKNOX1P55347 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PKNOX1P55347 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
PKNOX1P55347 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC15.42■□□□□ 0.06
PKNOX1P55347 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
PKNOX1P55347 AGAP7P-201ENST00000582299 2062 ntBASIC15.42■□□□□ 0.06
PKNOX1P55347 AGAP14-201ENST00000624701 2060 ntBASIC15.42■□□□□ 0.06
PKNOX1P55347 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PKNOX1P55347 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
PKNOX1P55347 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PKNOX1P55347 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PKNOX1P55347 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.42■□□□□ 0.06
PKNOX1P55347 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC15.41■□□□□ 0.06
PKNOX1P55347 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.41■□□□□ 0.06
PKNOX1P55347 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PKNOX1P55347 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
PKNOX1P55347 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC15.41■□□□□ 0.06
PKNOX1P55347 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.41■□□□□ 0.06
PKNOX1P55347 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PKNOX1P55347 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PKNOX1P55347 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
PKNOX1P55347 USP28-214ENST00000545540 3431 ntTSL 2 BASIC15.41■□□□□ 0.06
PKNOX1P55347 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PKNOX1P55347 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PKNOX1P55347 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PKNOX1P55347 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PKNOX1P55347 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.41■□□□□ 0.06
PKNOX1P55347 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15.41■□□□□ 0.06
PKNOX1P55347 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.41■□□□□ 0.06
PKNOX1P55347 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.41■□□□□ 0.06
PKNOX1P55347 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC15.41■□□□□ 0.06
PKNOX1P55347 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC15.41■□□□□ 0.06
PKNOX1P55347 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.41■□□□□ 0.06
PKNOX1P55347 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.41■□□□□ 0.06
PKNOX1P55347 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.41■□□□□ 0.06
PKNOX1P55347 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms