Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC15.17■□□□□ 0.02
FOXA1P55317 LITAF-210ENST00000571976 548 ntTSL 2 BASIC15.17■□□□□ 0.02
FOXA1P55317 LITAF-214ENST00000574703 486 ntTSL 2 BASIC15.17■□□□□ 0.02
FOXA1P55317 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA1P55317 RN7SL828P-201ENST00000607615 303 ntBASIC15.17■□□□□ 0.02
FOXA1P55317 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA1P55317 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA1P55317 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA1P55317 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
FOXA1P55317 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC15.17■□□□□ 0.02
FOXA1P55317 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA1P55317 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA1P55317 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA1P55317 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC15.17■□□□□ 0.02
FOXA1P55317 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
FOXA1P55317 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC15.17■□□□□ 0.02
FOXA1P55317 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA1P55317 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA1P55317 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA1P55317 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.16■□□□□ 0.02
FOXA1P55317 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
FOXA1P55317 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 AC026748.1-201ENST00000624349 3251 ntBASIC15.16■□□□□ 0.02
FOXA1P55317 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
FOXA1P55317 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC15.16■□□□□ 0.02
FOXA1P55317 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.16■□□□□ 0.02
FOXA1P55317 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC15.16■□□□□ 0.02
FOXA1P55317 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.16■□□□□ 0.02
FOXA1P55317 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
FOXA1P55317 FO393414.2-201ENST00000405153 598 ntBASIC15.16■□□□□ 0.02
FOXA1P55317 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.16■□□□□ 0.02
FOXA1P55317 AC074338.1-201ENST00000416825 156 ntBASIC15.16■□□□□ 0.02
FOXA1P55317 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.16■□□□□ 0.02
FOXA1P55317 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC15.16■□□□□ 0.02
FOXA1P55317 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.16■□□□□ 0.02
FOXA1P55317 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
FOXA1P55317 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.16■□□□□ 0.02
FOXA1P55317 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
FOXA1P55317 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC15.16■□□□□ 0.02
FOXA1P55317 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
FOXA1P55317 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.16■□□□□ 0.02
FOXA1P55317 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
FOXA1P55317 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA1P55317 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
FOXA1P55317 AL390755.1-201ENST00000623716 2027 ntBASIC15.16■□□□□ 0.02
FOXA1P55317 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA1P55317 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA1P55317 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
FOXA1P55317 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC15.15■□□□□ 0.02
FOXA1P55317 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC15.15■□□□□ 0.02
FOXA1P55317 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA1P55317 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA1P55317 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA1P55317 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA1P55317 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC15.15■□□□□ 0.02
FOXA1P55317 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC15.15■□□□□ 0.02
FOXA1P55317 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA1P55317 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.15■□□□□ 0.02
FOXA1P55317 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.15■□□□□ 0.02
FOXA1P55317 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
FOXA1P55317 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA1P55317 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA1P55317 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.15■□□□□ 0.02
FOXA1P55317 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.15■□□□□ 0.02
FOXA1P55317 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC15.15■□□□□ 0.02
FOXA1P55317 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.15■□□□□ 0.02
FOXA1P55317 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.15■□□□□ 0.02
FOXA1P55317 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.15■□□□□ 0.02
FOXA1P55317 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA1P55317 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC15.15■□□□□ 0.02
FOXA1P55317 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC15.15■□□□□ 0.02
FOXA1P55317 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
FOXA1P55317 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms