Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VCPP55072 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCPP55072 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.8■□□□□ 0.28
VCPP55072 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCPP55072 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCPP55072 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
VCPP55072 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VCPP55072 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC16.8■□□□□ 0.28
VCPP55072 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.8■□□□□ 0.28
VCPP55072 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
VCPP55072 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.28
VCPP55072 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCPP55072 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCPP55072 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCPP55072 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.79■□□□□ 0.28
VCPP55072 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VCPP55072 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.79■□□□□ 0.28
VCPP55072 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCPP55072 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCPP55072 AC092850.2-201ENST00000623821 2697 ntBASIC16.79■□□□□ 0.28
VCPP55072 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
VCPP55072 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCPP55072 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
VCPP55072 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCPP55072 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VCPP55072 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.79■□□□□ 0.28
VCPP55072 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.79■□□□□ 0.28
VCPP55072 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VCPP55072 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCPP55072 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
VCPP55072 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCPP55072 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCPP55072 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
VCPP55072 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCPP55072 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC16.79■□□□□ 0.28
VCPP55072 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
VCPP55072 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCPP55072 TPRX2P-201ENST00000535362 881 ntBASIC16.79■□□□□ 0.28
VCPP55072 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
VCPP55072 RHOQP1-201ENST00000555758 579 ntBASIC16.79■□□□□ 0.28
VCPP55072 AC023310.3-201ENST00000557027 670 ntBASIC16.79■□□□□ 0.28
VCPP55072 AC100756.1-201ENST00000562736 682 ntBASIC16.79■□□□□ 0.28
VCPP55072 AC138749.3-201ENST00000567691 622 ntBASIC16.79■□□□□ 0.28
VCPP55072 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC16.79■□□□□ 0.28
VCPP55072 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.79■□□□□ 0.28
VCPP55072 SRD5A3P1-201ENST00000603021 949 ntBASIC16.79■□□□□ 0.28
VCPP55072 AC116165.1-201ENST00000611806 668 ntBASIC16.79■□□□□ 0.28
VCPP55072 TEX48-202ENST00000612244 662 ntTSL 3 BASIC16.79■□□□□ 0.28
VCPP55072 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.79■□□□□ 0.28
VCPP55072 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.79■□□□□ 0.28
VCPP55072 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC16.79■□□□□ 0.28
VCPP55072 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCPP55072 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.79■□□□□ 0.28
VCPP55072 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCPP55072 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.79■□□□□ 0.28
VCPP55072 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCPP55072 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCPP55072 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.79■□□□□ 0.28
VCPP55072 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.79■□□□□ 0.28
VCPP55072 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCPP55072 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCPP55072 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCPP55072 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.79■□□□□ 0.28
VCPP55072 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCPP55072 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
VCPP55072 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCPP55072 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VCPP55072 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCPP55072 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VCPP55072 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
VCPP55072 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
VCPP55072 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
VCPP55072 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCPP55072 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VCPP55072 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCPP55072 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCPP55072 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.78■□□□□ 0.28
VCPP55072 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.78■□□□□ 0.28
VCPP55072 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC16.78■□□□□ 0.28
VCPP55072 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC16.78■□□□□ 0.28
VCPP55072 AC114501.2-201ENST00000439631 535 ntBASIC16.78■□□□□ 0.28
VCPP55072 AL355994.2-201ENST00000447882 704 ntBASIC16.78■□□□□ 0.28
VCPP55072 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VCPP55072 AC245100.5-201ENST00000452108 331 ntBASIC16.78■□□□□ 0.28
VCPP55072 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VCPP55072 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC16.78■□□□□ 0.28
VCPP55072 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC16.78■□□□□ 0.28
VCPP55072 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC16.78■□□□□ 0.28
VCPP55072 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC16.78■□□□□ 0.28
VCPP55072 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.78■□□□□ 0.28
VCPP55072 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC16.78■□□□□ 0.28
VCPP55072 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC16.78■□□□□ 0.28
VCPP55072 AL139099.5-201ENST00000635274 300 ntBASIC16.78■□□□□ 0.28
VCPP55072 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
VCPP55072 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCPP55072 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VCPP55072 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
VCPP55072 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.78■□□□□ 0.28
VCPP55072 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.78■□□□□ 0.28
VCPP55072 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms