Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.62■□□□□ 0.09
MSH3P20585 AL136379.1-201ENST00000623471 2642 ntBASIC15.62■□□□□ 0.09
MSH3P20585 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSH3P20585 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSH3P20585 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
MSH3P20585 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.62■□□□□ 0.09
MSH3P20585 MRPS18AP1-201ENST00000414458 589 ntBASIC15.62■□□□□ 0.09
MSH3P20585 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
MSH3P20585 HMGN1P19-201ENST00000436976 333 ntBASIC15.62■□□□□ 0.09
MSH3P20585 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.62■□□□□ 0.09
MSH3P20585 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC15.62■□□□□ 0.09
MSH3P20585 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC15.62■□□□□ 0.09
MSH3P20585 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
MSH3P20585 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC15.62■□□□□ 0.09
MSH3P20585 REEP4-207ENST00000523293 913 ntTSL 3 BASIC15.62■□□□□ 0.09
MSH3P20585 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.62■□□□□ 0.09
MSH3P20585 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC15.62■□□□□ 0.09
MSH3P20585 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.62■□□□□ 0.09
MSH3P20585 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSH3P20585 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSH3P20585 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSH3P20585 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSH3P20585 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSH3P20585 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSH3P20585 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.62■□□□□ 0.09
MSH3P20585 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSH3P20585 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
MSH3P20585 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSH3P20585 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.62■□□□□ 0.09
MSH3P20585 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.62■□□□□ 0.09
MSH3P20585 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.62■□□□□ 0.09
MSH3P20585 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC15.62■□□□□ 0.09
MSH3P20585 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.62■□□□□ 0.09
MSH3P20585 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSH3P20585 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSH3P20585 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSH3P20585 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
MSH3P20585 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.62■□□□□ 0.09
MSH3P20585 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSH3P20585 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.62■□□□□ 0.09
MSH3P20585 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.62■□□□□ 0.09
MSH3P20585 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.62■□□□□ 0.09
MSH3P20585 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.62■□□□□ 0.09
MSH3P20585 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
MSH3P20585 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC15.61■□□□□ 0.09
MSH3P20585 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.61■□□□□ 0.09
MSH3P20585 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
MSH3P20585 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
MSH3P20585 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
MSH3P20585 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.61■□□□□ 0.09
MSH3P20585 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.61■□□□□ 0.09
MSH3P20585 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.61■□□□□ 0.09
MSH3P20585 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
MSH3P20585 TSPY16P-201ENST00000449843 468 ntBASIC15.61■□□□□ 0.09
MSH3P20585 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC15.61■□□□□ 0.09
MSH3P20585 UGT1A2P-201ENST00000454886 866 ntBASIC15.61■□□□□ 0.09
MSH3P20585 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 SLED1-202ENST00000512051 380 ntBASIC15.61■□□□□ 0.09
MSH3P20585 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC15.61■□□□□ 0.09
MSH3P20585 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.61■□□□□ 0.09
MSH3P20585 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC15.61■□□□□ 0.09
MSH3P20585 LINC01115-203ENST00000606068 577 ntBASIC15.61■□□□□ 0.09
MSH3P20585 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC15.61■□□□□ 0.09
MSH3P20585 AC004840.1-201ENST00000636359 365 ntBASIC15.61■□□□□ 0.09
MSH3P20585 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
MSH3P20585 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC15.61■□□□□ 0.09
MSH3P20585 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
MSH3P20585 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
MSH3P20585 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC15.61■□□□□ 0.09
MSH3P20585 CICP13-201ENST00000422015 2789 ntBASIC15.61■□□□□ 0.09
MSH3P20585 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.61■□□□□ 0.09
MSH3P20585 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
MSH3P20585 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
MSH3P20585 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms