Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.24■□□□□ 0.03
LDLRP01130 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
LDLRP01130 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
LDLRP01130 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC15.24■□□□□ 0.03
LDLRP01130 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.24■□□□□ 0.03
LDLRP01130 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.24■□□□□ 0.03
LDLRP01130 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC15.24■□□□□ 0.03
LDLRP01130 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.24■□□□□ 0.03
LDLRP01130 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC15.24■□□□□ 0.03
LDLRP01130 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC15.24■□□□□ 0.03
LDLRP01130 AC027307.3-201ENST00000594262 1100 ntBASIC15.24■□□□□ 0.03
LDLRP01130 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC15.24■□□□□ 0.03
LDLRP01130 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 AL390754.1-201ENST00000619088 582 ntBASIC15.24■□□□□ 0.03
LDLRP01130 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC15.24■□□□□ 0.03
LDLRP01130 SERF2-217ENST00000630046 862 ntTSL 5 BASIC15.24■□□□□ 0.03
LDLRP01130 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.24■□□□□ 0.03
LDLRP01130 AL353732.1-201ENST00000569618 1459 ntBASIC15.24■□□□□ 0.03
LDLRP01130 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.24■□□□□ 0.03
LDLRP01130 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC15.24■□□□□ 0.03
LDLRP01130 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.24■□□□□ 0.03
LDLRP01130 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.24■□□□□ 0.03
LDLRP01130 LINC01101-201ENST00000622953 1884 ntBASIC15.24■□□□□ 0.03
LDLRP01130 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC15.24■□□□□ 0.03
LDLRP01130 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC15.24■□□□□ 0.03
LDLRP01130 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
LDLRP01130 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.24■□□□□ 0.03
LDLRP01130 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
LDLRP01130 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.24■□□□□ 0.03
LDLRP01130 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDLRP01130 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
LDLRP01130 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDLRP01130 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
LDLRP01130 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LDLRP01130 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDLRP01130 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDLRP01130 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
LDLRP01130 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDLRP01130 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDLRP01130 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC15.23■□□□□ 0.03
LDLRP01130 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDLRP01130 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC15.23■□□□□ 0.03
LDLRP01130 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LDLRP01130 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.23■□□□□ 0.03
LDLRP01130 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.23■□□□□ 0.03
LDLRP01130 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LDLRP01130 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LDLRP01130 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
LDLRP01130 GOLGA6L11P-201ENST00000417252 1298 ntBASIC15.23■□□□□ 0.03
LDLRP01130 TREML5P-201ENST00000421694 576 ntBASIC15.23■□□□□ 0.03
LDLRP01130 GPS2P2-201ENST00000430745 888 ntBASIC15.23■□□□□ 0.03
LDLRP01130 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC15.23■□□□□ 0.03
LDLRP01130 NOP2-220ENST00000545915 630 ntTSL 2 BASIC15.23■□□□□ 0.03
LDLRP01130 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.23■□□□□ 0.03
LDLRP01130 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDLRP01130 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC15.23■□□□□ 0.03
LDLRP01130 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
LDLRP01130 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC15.23■□□□□ 0.03
LDLRP01130 AC023908.3-201ENST00000564211 3047 ntBASIC15.23■□□□□ 0.03
LDLRP01130 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LDLRP01130 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDLRP01130 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDLRP01130 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDLRP01130 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDLRP01130 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDLRP01130 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
LDLRP01130 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDLRP01130 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.23■□□□□ 0.03
LDLRP01130 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC15.23■□□□□ 0.03
LDLRP01130 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDLRP01130 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDLRP01130 U82695.1-201ENST00000635752 1889 ntBASIC15.23■□□□□ 0.03
LDLRP01130 POR-201ENST00000394893 2532 ntTSL 5 BASIC15.22■□□□□ 0.03
LDLRP01130 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LDLRP01130 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
LDLRP01130 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC15.22■□□□□ 0.03
LDLRP01130 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LDLRP01130 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
LDLRP01130 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LDLRP01130 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.22■□□□□ 0.03
LDLRP01130 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.22■□□□□ 0.03
LDLRP01130 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LDLRP01130 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
LDLRP01130 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms