Protein–RNA interactions for Protein: O95749

GGPS1, Geranylgeranyl pyrophosphate synthase, humanhuman

Predictions only

Length 300 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GGPS1O95749 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
GGPS1O95749 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
GGPS1O95749 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
GGPS1O95749 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
GGPS1O95749 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
GGPS1O95749 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC17.52■□□□□ 0.39
GGPS1O95749 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
GGPS1O95749 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
GGPS1O95749 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.52■□□□□ 0.39
GGPS1O95749 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
GGPS1O95749 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
GGPS1O95749 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
GGPS1O95749 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
GGPS1O95749 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC17.51■□□□□ 0.39
GGPS1O95749 AGER-206ENST00000375070 1463 ntTSL 5 BASIC17.51■□□□□ 0.39
GGPS1O95749 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
GGPS1O95749 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
GGPS1O95749 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
GGPS1O95749 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC17.51■□□□□ 0.39
GGPS1O95749 AC105917.1-201ENST00000506637 2539 ntBASIC17.51■□□□□ 0.39
GGPS1O95749 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
GGPS1O95749 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
GGPS1O95749 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC17.51■□□□□ 0.39
GGPS1O95749 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC17.51■□□□□ 0.39
GGPS1O95749 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
GGPS1O95749 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
GGPS1O95749 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC17.51■□□□□ 0.39
GGPS1O95749 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
GGPS1O95749 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
GGPS1O95749 STX1A-203ENST00000395155 783 ntTSL 2 BASIC17.51■□□□□ 0.39
GGPS1O95749 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC17.51■□□□□ 0.39
GGPS1O95749 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC17.51■□□□□ 0.39
GGPS1O95749 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC17.51■□□□□ 0.39
GGPS1O95749 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC17.51■□□□□ 0.39
GGPS1O95749 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC17.51■□□□□ 0.39
GGPS1O95749 AP001582.1-201ENST00000525856 295 ntBASIC17.51■□□□□ 0.39
GGPS1O95749 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC17.51■□□□□ 0.39
GGPS1O95749 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC17.51■□□□□ 0.39
GGPS1O95749 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC17.51■□□□□ 0.39
GGPS1O95749 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.51■□□□□ 0.39
GGPS1O95749 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC17.51■□□□□ 0.39
GGPS1O95749 AC112504.1-201ENST00000623415 1841 ntBASIC17.51■□□□□ 0.39
GGPS1O95749 AC008894.3-201ENST00000624324 3103 ntBASIC17.51■□□□□ 0.39
GGPS1O95749 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
GGPS1O95749 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
GGPS1O95749 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
GGPS1O95749 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.51■□□□□ 0.39
GGPS1O95749 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
GGPS1O95749 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
GGPS1O95749 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.51■□□□□ 0.39
GGPS1O95749 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC17.51■□□□□ 0.39
GGPS1O95749 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
GGPS1O95749 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
GGPS1O95749 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
GGPS1O95749 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
GGPS1O95749 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
GGPS1O95749 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
GGPS1O95749 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
GGPS1O95749 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC17.5■□□□□ 0.39
GGPS1O95749 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC17.5■□□□□ 0.39
GGPS1O95749 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC17.5■□□□□ 0.39
GGPS1O95749 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
GGPS1O95749 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
GGPS1O95749 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
GGPS1O95749 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
GGPS1O95749 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
GGPS1O95749 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
GGPS1O95749 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
GGPS1O95749 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
GGPS1O95749 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
GGPS1O95749 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
GGPS1O95749 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
GGPS1O95749 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC17.5■□□□□ 0.39
GGPS1O95749 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC17.5■□□□□ 0.39
GGPS1O95749 AC007551.1-201ENST00000457394 519 ntBASIC17.5■□□□□ 0.39
GGPS1O95749 FTH1P14-201ENST00000482930 551 ntBASIC17.5■□□□□ 0.39
GGPS1O95749 GAPDHP40-201ENST00000505218 1006 ntBASIC17.5■□□□□ 0.39
GGPS1O95749 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC17.5■□□□□ 0.39
GGPS1O95749 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
GGPS1O95749 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
GGPS1O95749 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.5■□□□□ 0.39
GGPS1O95749 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
GGPS1O95749 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
GGPS1O95749 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC17.5■□□□□ 0.39
GGPS1O95749 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
GGPS1O95749 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
GGPS1O95749 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
GGPS1O95749 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
GGPS1O95749 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
GGPS1O95749 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
GGPS1O95749 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
GGPS1O95749 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
GGPS1O95749 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
GGPS1O95749 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
GGPS1O95749 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
GGPS1O95749 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
GGPS1O95749 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
GGPS1O95749 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
GGPS1O95749 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
GGPS1O95749 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms