Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC243562.2-201ENST00000561247 970 ntBASIC13.83□□□□□ -0.2
LMX1BO60663 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC13.83□□□□□ -0.2
LMX1BO60663 NKG7-205ENST00000600427 520 ntTSL 3 BASIC13.83□□□□□ -0.2
LMX1BO60663 AC008267.7-201ENST00000624570 1194 ntBASIC13.83□□□□□ -0.2
LMX1BO60663 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LMX1BO60663 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC13.83□□□□□ -0.2
LMX1BO60663 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LMX1BO60663 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LMX1BO60663 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
LMX1BO60663 MST1L-201ENST00000442552 2185 ntBASIC13.83□□□□□ -0.2
LMX1BO60663 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LMX1BO60663 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LMX1BO60663 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC13.83□□□□□ -0.2
LMX1BO60663 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LMX1BO60663 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LMX1BO60663 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.2
LMX1BO60663 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
LMX1BO60663 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
LMX1BO60663 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC13.83□□□□□ -0.2
LMX1BO60663 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LMX1BO60663 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LMX1BO60663 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LMX1BO60663 ZEB1-AS1-208ENST00000607166 2503 ntBASIC13.83□□□□□ -0.2
LMX1BO60663 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LMX1BO60663 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMX1BO60663 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMX1BO60663 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMX1BO60663 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
LMX1BO60663 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMX1BO60663 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LMX1BO60663 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMX1BO60663 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC13.82□□□□□ -0.2
LMX1BO60663 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LMX1BO60663 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMX1BO60663 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMX1BO60663 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC13.82□□□□□ -0.2
LMX1BO60663 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC13.82□□□□□ -0.2
LMX1BO60663 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMX1BO60663 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMX1BO60663 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LMX1BO60663 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMX1BO60663 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC13.82□□□□□ -0.2
LMX1BO60663 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
LMX1BO60663 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC13.82□□□□□ -0.2
LMX1BO60663 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LMX1BO60663 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC13.82□□□□□ -0.2
LMX1BO60663 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC13.82□□□□□ -0.2
LMX1BO60663 COQ9-214ENST00000567933 882 ntTSL 3 BASIC13.82□□□□□ -0.2
LMX1BO60663 AC106881.1-201ENST00000605849 3329 ntBASIC13.82□□□□□ -0.2
LMX1BO60663 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMX1BO60663 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC13.82□□□□□ -0.2
LMX1BO60663 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC13.82□□□□□ -0.2
LMX1BO60663 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LMX1BO60663 AC127383.1-201ENST00000444697 1800 ntBASIC13.82□□□□□ -0.2
LMX1BO60663 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
LMX1BO60663 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC13.82□□□□□ -0.2
LMX1BO60663 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
LMX1BO60663 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
LMX1BO60663 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC13.82□□□□□ -0.2
LMX1BO60663 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC13.81□□□□□ -0.2
LMX1BO60663 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC13.81□□□□□ -0.2
LMX1BO60663 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
LMX1BO60663 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
LMX1BO60663 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC13.81□□□□□ -0.2
LMX1BO60663 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
LMX1BO60663 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
LMX1BO60663 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
LMX1BO60663 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC13.81□□□□□ -0.2
LMX1BO60663 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC13.81□□□□□ -0.2
LMX1BO60663 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC13.81□□□□□ -0.2
LMX1BO60663 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 AC241585.1-201ENST00000433527 519 ntBASIC13.81□□□□□ -0.2
LMX1BO60663 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC13.81□□□□□ -0.2
LMX1BO60663 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC13.81□□□□□ -0.2
LMX1BO60663 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC13.81□□□□□ -0.2
LMX1BO60663 PPP6R2P1-201ENST00000450880 1275 ntBASIC13.81□□□□□ -0.2
LMX1BO60663 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC13.81□□□□□ -0.2
LMX1BO60663 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
LMX1BO60663 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LMX1BO60663 AC024267.1-201ENST00000582320 895 ntBASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms