Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC22.03■■□□□ 1.12
MSH5O43196 NOVA1-AS1-201ENST00000547786 818 ntTSL 3 BASIC22.03■■□□□ 1.12
MSH5O43196 TSFM-210ENST00000550559 897 ntTSL 5 BASIC22.03■■□□□ 1.12
MSH5O43196 AC009101.1-201ENST00000568135 242 ntBASIC22.03■■□□□ 1.12
MSH5O43196 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC22.03■■□□□ 1.12
MSH5O43196 GMFG-210ENST00000601387 497 ntTSL 3 BASIC22.03■■□□□ 1.12
MSH5O43196 ACTL9-202ENST00000612068 1252 ntBASIC22.03■■□□□ 1.12
MSH5O43196 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC22.03■■□□□ 1.12
MSH5O43196 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
MSH5O43196 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
MSH5O43196 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC22.03■■□□□ 1.12
MSH5O43196 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
MSH5O43196 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC22.03■■□□□ 1.12
MSH5O43196 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
MSH5O43196 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC22.03■■□□□ 1.12
MSH5O43196 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
MSH5O43196 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
MSH5O43196 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
MSH5O43196 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
MSH5O43196 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC22.03■■□□□ 1.12
MSH5O43196 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
MSH5O43196 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC22.03■■□□□ 1.12
MSH5O43196 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
MSH5O43196 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
MSH5O43196 AC100803.2-201ENST00000562459 1963 ntBASIC22.03■■□□□ 1.12
MSH5O43196 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
MSH5O43196 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC22.03■■□□□ 1.12
MSH5O43196 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC22.03■■□□□ 1.12
MSH5O43196 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
MSH5O43196 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
MSH5O43196 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC22.02■■□□□ 1.12
MSH5O43196 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC22.02■■□□□ 1.12
MSH5O43196 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
MSH5O43196 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
MSH5O43196 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
MSH5O43196 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC22.02■■□□□ 1.12
MSH5O43196 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC22.02■■□□□ 1.12
MSH5O43196 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
MSH5O43196 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
MSH5O43196 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
MSH5O43196 RPL30-202ENST00000396070 440 ntTSL 2 BASIC22.02■■□□□ 1.12
MSH5O43196 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC22.02■■□□□ 1.12
MSH5O43196 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC22.02■■□□□ 1.12
MSH5O43196 HLA-V-201ENST00000429037 534 ntBASIC22.02■■□□□ 1.12
MSH5O43196 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC22.02■■□□□ 1.12
MSH5O43196 AC026391.1-201ENST00000450677 537 ntTSL 3 BASIC22.02■■□□□ 1.12
MSH5O43196 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC22.02■■□□□ 1.12
MSH5O43196 MRPS36P5-201ENST00000551909 298 ntBASIC22.02■■□□□ 1.12
MSH5O43196 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC22.02■■□□□ 1.12
MSH5O43196 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC22.02■■□□□ 1.12
MSH5O43196 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
MSH5O43196 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC22.02■■□□□ 1.12
MSH5O43196 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
MSH5O43196 GAPDHP41-201ENST00000613707 975 ntBASIC22.02■■□□□ 1.12
MSH5O43196 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
MSH5O43196 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
MSH5O43196 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
MSH5O43196 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
MSH5O43196 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC22.02■■□□□ 1.12
MSH5O43196 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC22.02■■□□□ 1.12
MSH5O43196 TMOD2-202ENST00000435126 1490 ntTSL 2 BASIC22.02■■□□□ 1.12
MSH5O43196 AC019117.2-202ENST00000635900 1476 ntTSL 5 BASIC22.02■■□□□ 1.12
MSH5O43196 AC063923.1-201ENST00000478982 1619 ntBASIC22.02■■□□□ 1.11
MSH5O43196 LINC00941-201ENST00000547804 1645 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
MSH5O43196 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
MSH5O43196 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
MSH5O43196 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC22.02■■□□□ 1.11
MSH5O43196 SLC9A7P1-201ENST00000554295 3311 ntBASIC22.01■■□□□ 1.11
MSH5O43196 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
MSH5O43196 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH5O43196 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
MSH5O43196 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH5O43196 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH5O43196 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC22.01■■□□□ 1.11
MSH5O43196 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
MSH5O43196 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH5O43196 FGF21-201ENST00000222157 885 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH5O43196 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH5O43196 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH5O43196 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH5O43196 VMA21-202ENST00000370361 693 ntTSL 5 BASIC22.01■■□□□ 1.11
MSH5O43196 BAD-202ENST00000394531 631 ntTSL 3 BASIC22.01■■□□□ 1.11
MSH5O43196 GOLGA6L11P-201ENST00000417252 1298 ntBASIC22.01■■□□□ 1.11
MSH5O43196 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC22.01■■□□□ 1.11
MSH5O43196 TRAPPC13P1-201ENST00000435991 1062 ntBASIC22.01■■□□□ 1.11
MSH5O43196 NPM1P48-201ENST00000436002 853 ntBASIC22.01■■□□□ 1.11
MSH5O43196 FAM207CP-201ENST00000443486 507 ntBASIC22.01■■□□□ 1.11
MSH5O43196 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC22.01■■□□□ 1.11
MSH5O43196 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC22.01■■□□□ 1.11
MSH5O43196 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC22.01■■□□□ 1.11
MSH5O43196 AC109927.2-201ENST00000506416 303 ntBASIC22.01■■□□□ 1.11
MSH5O43196 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC22.01■■□□□ 1.11
MSH5O43196 BAD-207ENST00000544785 525 ntTSL 3 BASIC22.01■■□□□ 1.11
MSH5O43196 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC22.01■■□□□ 1.11
MSH5O43196 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC22.01■■□□□ 1.11
MSH5O43196 OR1AB1P-201ENST00000585564 761 ntBASIC22.01■■□□□ 1.11
MSH5O43196 AC099522.2-201ENST00000607001 744 ntBASIC22.01■■□□□ 1.11
MSH5O43196 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH5O43196 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
MSH5O43196 AL357562.1-201ENST00000624911 609 ntBASIC22.01■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms