Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC15.28■□□□□ 0.04
HDAC3O15379 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC3O15379 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC15.28■□□□□ 0.04
HDAC3O15379 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC3O15379 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC3O15379 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC3O15379 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
HDAC3O15379 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC3O15379 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.28■□□□□ 0.04
HDAC3O15379 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.28■□□□□ 0.04
HDAC3O15379 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.28■□□□□ 0.04
HDAC3O15379 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC15.28■□□□□ 0.04
HDAC3O15379 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC3O15379 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC3O15379 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC3O15379 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC3O15379 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC3O15379 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC3O15379 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
HDAC3O15379 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC3O15379 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.28■□□□□ 0.04
HDAC3O15379 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
HDAC3O15379 AC136604.1-201ENST00000418535 575 ntBASIC15.28■□□□□ 0.04
HDAC3O15379 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC15.28■□□□□ 0.04
HDAC3O15379 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.28■□□□□ 0.04
HDAC3O15379 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC15.28■□□□□ 0.04
HDAC3O15379 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC15.28■□□□□ 0.04
HDAC3O15379 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC15.28■□□□□ 0.04
HDAC3O15379 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC3O15379 AC104692.2-201ENST00000603054 253 ntBASIC15.28■□□□□ 0.04
HDAC3O15379 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC15.28■□□□□ 0.04
HDAC3O15379 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC3O15379 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC15.28■□□□□ 0.04
HDAC3O15379 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC3O15379 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
HDAC3O15379 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC15.28■□□□□ 0.04
HDAC3O15379 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC3O15379 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.28■□□□□ 0.04
HDAC3O15379 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC3O15379 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC3O15379 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
HDAC3O15379 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC3O15379 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HDAC3O15379 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.28■□□□□ 0.04
HDAC3O15379 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.04
HDAC3O15379 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HDAC3O15379 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC15.27■□□□□ 0.04
HDAC3O15379 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC15.27■□□□□ 0.04
HDAC3O15379 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
HDAC3O15379 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC15.27■□□□□ 0.04
HDAC3O15379 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC15.27■□□□□ 0.04
HDAC3O15379 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
HDAC3O15379 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
HDAC3O15379 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC15.27■□□□□ 0.04
HDAC3O15379 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
HDAC3O15379 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HDAC3O15379 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
HDAC3O15379 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HDAC3O15379 AC004870.1-201ENST00000315132 882 ntBASIC15.27■□□□□ 0.04
HDAC3O15379 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.27■□□□□ 0.04
HDAC3O15379 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HDAC3O15379 KRT18P2-201ENST00000447938 1258 ntBASIC15.27■□□□□ 0.04
HDAC3O15379 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
HDAC3O15379 RN7SL510P-201ENST00000581311 263 ntBASIC15.27■□□□□ 0.04
HDAC3O15379 AC026979.3-201ENST00000607315 403 ntBASIC15.27■□□□□ 0.04
HDAC3O15379 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HDAC3O15379 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC15.27■□□□□ 0.04
HDAC3O15379 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC15.27■□□□□ 0.04
HDAC3O15379 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
HDAC3O15379 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
HDAC3O15379 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HDAC3O15379 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
HDAC3O15379 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC15.27■□□□□ 0.03
HDAC3O15379 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.27■□□□□ 0.03
HDAC3O15379 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
HDAC3O15379 ACE3P-201ENST00000423435 1973 ntBASIC15.27■□□□□ 0.03
HDAC3O15379 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC15.27■□□□□ 0.03
HDAC3O15379 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC15.27■□□□□ 0.03
HDAC3O15379 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.03
HDAC3O15379 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
HDAC3O15379 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
HDAC3O15379 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.27■□□□□ 0.03
HDAC3O15379 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC3O15379 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC3O15379 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC3O15379 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC3O15379 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC3O15379 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC3O15379 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC3O15379 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
HDAC3O15379 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
HDAC3O15379 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.26■□□□□ 0.03
HDAC3O15379 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC3O15379 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC3O15379 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.26■□□□□ 0.03
HDAC3O15379 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.26■□□□□ 0.03
HDAC3O15379 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC15.26■□□□□ 0.03
HDAC3O15379 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC15.26■□□□□ 0.03
HDAC3O15379 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC15.26■□□□□ 0.03
HDAC3O15379 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms