Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 AC015967.2-201ENST00000624092 234 ntBASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 AC006435.4-201ENST00000625037 234 ntBASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 AL356737.1-201ENST00000634391 234 ntBASIC15.02■□□□□ -0
PCDHGA1Q9Y5H4 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC15.02□□□□□ -0.01
PCDHGA1Q9Y5H4 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.02□□□□□ -0.01
PCDHGA1Q9Y5H4 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.02□□□□□ -0.01
PCDHGA1Q9Y5H4 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
PCDHGA1Q9Y5H4 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
PCDHGA1Q9Y5H4 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
PCDHGA1Q9Y5H4 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PCDHGA1Q9Y5H4 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC15.02□□□□□ -0.01
PCDHGA1Q9Y5H4 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PCDHGA1Q9Y5H4 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
PCDHGA1Q9Y5H4 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
PCDHGA1Q9Y5H4 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PCDHGA1Q9Y5H4 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC15.02□□□□□ -0.01
PCDHGA1Q9Y5H4 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PCDHGA1Q9Y5H4 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 AL662890.1-201ENST00000396818 632 ntBASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 GAPDHP40-201ENST00000505218 1006 ntBASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 NEU3-202ENST00000526068 431 ntTSL 2 BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 HNRNPA1P48-202ENST00000565308 961 ntBASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDHGA1Q9Y5H4 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 OS9-205ENST00000413095 1660 ntTSL 2 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 AC105020.1-201ENST00000435356 2205 ntBASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 PCDH8P1-201ENST00000428983 2773 ntBASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 ACR-203ENST00000529621 708 ntTSL 5 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 MIR4741-201ENST00000579822 90 ntBASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 AC104982.3-201ENST00000581995 514 ntBASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 DIO1-215ENST00000610607 796 ntTSL 5 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 AL021578.1-201ENST00000613646 709 ntBASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 AC134407.2-201ENST00000625089 1978 ntBASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms