Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 RPL30-202ENST00000396070 440 ntTSL 2 BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 UPF3AP3-201ENST00000420996 769 ntBASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 IMPDH1P4-201ENST00000445028 1534 ntBASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 KRT8P12-202ENST00000472924 1397 ntBASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HIF3AQ9Y2N7 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 SBF1P1-201ENST00000444527 5631 ntBASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 MECR-202ENST00000373791 2416 ntTSL 2 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 AP001059.3-201ENST00000619053 235 ntBASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
HIF3AQ9Y2N7 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC14.17□□□□□ -0.14
HIF3AQ9Y2N7 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms