Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AL139384.1-201ENST00000612143 3047 ntBASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 AC010491.1-201ENST00000563101 2797 ntBASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 SUPT20HL2-201ENST00000486479 2409 ntBASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC29.43■■■□□ 2.3
SHROOM4Q9ULL8 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC29.43■■■□□ 2.3
SHROOM4Q9ULL8 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
SHROOM4Q9ULL8 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
SHROOM4Q9ULL8 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC29.43■■■□□ 2.3
SHROOM4Q9ULL8 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
SHROOM4Q9ULL8 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC29.43■■■□□ 2.3
SHROOM4Q9ULL8 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC29.43■■■□□ 2.3
SHROOM4Q9ULL8 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC29.43■■■□□ 2.3
SHROOM4Q9ULL8 KSR1-207ENST00000578981 748 ntTSL 4 BASIC29.43■■■□□ 2.3
SHROOM4Q9ULL8 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC29.43■■■□□ 2.3
SHROOM4Q9ULL8 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
SHROOM4Q9ULL8 CYP2AB1P-202ENST00000454440 1456 ntBASIC29.43■■■□□ 2.3
SHROOM4Q9ULL8 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
SHROOM4Q9ULL8 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
SHROOM4Q9ULL8 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC29.43■■■□□ 2.3
SHROOM4Q9ULL8 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
SHROOM4Q9ULL8 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC29.43■■■□□ 2.3
SHROOM4Q9ULL8 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC29.43■■■□□ 2.3
SHROOM4Q9ULL8 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
SHROOM4Q9ULL8 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC29.43■■■□□ 2.3
SHROOM4Q9ULL8 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC29.43■■■□□ 2.3
SHROOM4Q9ULL8 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC29.43■■■□□ 2.3
SHROOM4Q9ULL8 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
SHROOM4Q9ULL8 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 RAC2-202ENST00000401529 569 ntTSL 4 BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 AC079178.1-201ENST00000420915 656 ntBASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 KLK11-210ENST00000600362 759 ntTSL 3 BASIC29.42■■■□□ 2.3
SHROOM4Q9ULL8 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC29.41■■■□□ 2.3
SHROOM4Q9ULL8 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
SHROOM4Q9ULL8 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC29.41■■■□□ 2.3
SHROOM4Q9ULL8 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
SHROOM4Q9ULL8 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC29.41■■■□□ 2.3
SHROOM4Q9ULL8 PCDHB19P-201ENST00000570871 2371 ntBASIC29.41■■■□□ 2.3
SHROOM4Q9ULL8 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC29.41■■■□□ 2.3
SHROOM4Q9ULL8 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC29.41■■■□□ 2.3
SHROOM4Q9ULL8 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
SHROOM4Q9ULL8 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
SHROOM4Q9ULL8 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
SHROOM4Q9ULL8 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC29.41■■■□□ 2.3
SHROOM4Q9ULL8 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC29.41■■■□□ 2.3
SHROOM4Q9ULL8 MIR7845-201ENST00000618396 99 ntBASIC29.41■■■□□ 2.3
SHROOM4Q9ULL8 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
SHROOM4Q9ULL8 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC29.4■■■□□ 2.3
SHROOM4Q9ULL8 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC29.4■■■□□ 2.3
SHROOM4Q9ULL8 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC29.4■■■□□ 2.3
SHROOM4Q9ULL8 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC29.4■■■□□ 2.3
SHROOM4Q9ULL8 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC29.4■■■□□ 2.3
SHROOM4Q9ULL8 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
SHROOM4Q9ULL8 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC29.4■■■□□ 2.3
SHROOM4Q9ULL8 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC29.4■■■□□ 2.3
SHROOM4Q9ULL8 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC29.4■■■□□ 2.3
SHROOM4Q9ULL8 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC29.4■■■□□ 2.3
SHROOM4Q9ULL8 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC29.4■■■□□ 2.3
SHROOM4Q9ULL8 UBL5-208ENST00000593087 320 ntTSL 3 BASIC29.4■■■□□ 2.3
SHROOM4Q9ULL8 AC026740.1-201ENST00000607068 791 ntBASIC29.4■■■□□ 2.3
SHROOM4Q9ULL8 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC29.4■■■□□ 2.3
SHROOM4Q9ULL8 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC29.4■■■□□ 2.3
SHROOM4Q9ULL8 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
SHROOM4Q9ULL8 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
SHROOM4Q9ULL8 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
SHROOM4Q9ULL8 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC29.39■■■□□ 2.3
SHROOM4Q9ULL8 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC29.39■■■□□ 2.3
SHROOM4Q9ULL8 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC29.39■■■□□ 2.3
SHROOM4Q9ULL8 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC29.39■■■□□ 2.3
SHROOM4Q9ULL8 RN7SL574P-201ENST00000581512 297 ntBASIC29.39■■■□□ 2.3
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms