Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 RASL12-203ENST00000434605 982 ntTSL 2 BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 AC092337.1-201ENST00000568699 1129 ntBASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 HADH-212ENST00000638621 741 ntTSL 5 BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC20.1■□□□□ 0.81
SMC4Q9NTJ3 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 AC084364.1-201ENST00000551967 1556 ntBASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 TOMM22P5-201ENST00000416399 439 ntBASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 INGX-202ENST00000489074 768 ntBASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 TIMM17BP1-201ENST00000545713 516 ntBASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 AC015910.1-201ENST00000579400 975 ntBASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 BANP-201ENST00000286122 2368 ntTSL 5 BASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 AMT-224ENST00000635808 1610 ntTSL 5 BASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMC4Q9NTJ3 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SMC4Q9NTJ3 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC20.08■□□□□ 0.81
SMC4Q9NTJ3 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SMC4Q9NTJ3 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SMC4Q9NTJ3 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
SMC4Q9NTJ3 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC20.08■□□□□ 0.81
SMC4Q9NTJ3 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC20.08■□□□□ 0.81
SMC4Q9NTJ3 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SMC4Q9NTJ3 AL121723.1-201ENST00000445194 1519 ntBASIC20.08■□□□□ 0.81
SMC4Q9NTJ3 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SMC4Q9NTJ3 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SMC4Q9NTJ3 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
SMC4Q9NTJ3 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SMC4Q9NTJ3 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC20.08■□□□□ 0.81
SMC4Q9NTJ3 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
SMC4Q9NTJ3 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC20.08■□□□□ 0.81
SMC4Q9NTJ3 TK1-203ENST00000588734 1681 ntTSL 2 BASIC20.08■□□□□ 0.81
SMC4Q9NTJ3 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SMC4Q9NTJ3 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC20.08■□□□□ 0.81
SMC4Q9NTJ3 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC20.08■□□□□ 0.81
SMC4Q9NTJ3 RNA5SP421-201ENST00000516864 134 ntBASIC20.08■□□□□ 0.81
SMC4Q9NTJ3 ARL16-202ENST00000570561 768 ntTSL 2 BASIC20.08■□□□□ 0.81
SMC4Q9NTJ3 SRD5A3P1-201ENST00000603021 949 ntBASIC20.08■□□□□ 0.81
SMC4Q9NTJ3 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC20.08■□□□□ 0.8
SMC4Q9NTJ3 DBET-201ENST00000630918 3363 ntBASIC20.08■□□□□ 0.8
SMC4Q9NTJ3 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SMC4Q9NTJ3 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SMC4Q9NTJ3 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SMC4Q9NTJ3 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SMC4Q9NTJ3 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
SMC4Q9NTJ3 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SMC4Q9NTJ3 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SMC4Q9NTJ3 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.8
SMC4Q9NTJ3 AL109954.1-202ENST00000564051 2148 ntBASIC20.08■□□□□ 0.8
SMC4Q9NTJ3 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC20.08■□□□□ 0.8
SMC4Q9NTJ3 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
SMC4Q9NTJ3 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
SMC4Q9NTJ3 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 TP73-209ENST00000603362 1668 ntTSL 5 BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SMC4Q9NTJ3 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms