Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 AL161772.1-201ENST00000610494 4412 ntBASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
CLIP3Q96DZ5 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 AC087499.6-201ENST00000411576 835 ntBASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 AC243562.2-201ENST00000561247 970 ntBASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 AC140912.1-201ENST00000577171 1054 ntBASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLIP3Q96DZ5 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 GRAP-202ENST00000395635 834 ntTSL 2 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 FO393414.2-201ENST00000405153 598 ntBASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 DFFBP1-201ENST00000433250 979 ntBASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 AC114501.2-201ENST00000439631 535 ntBASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 AC093004.1-201ENST00000508850 424 ntBASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms