Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 AL627231.1-201ENST00000394467 1125 ntBASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 RGS5-214ENST00000429865 754 ntTSL 3 BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 AC104073.2-201ENST00000453737 312 ntBASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 AC090857.1-201ENST00000527400 390 ntBASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 MIR4754-201ENST00000582477 89 ntBASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 PRSS30P-206ENST00000641773 873 ntBASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMC1BQ8NDV3 TBC1D3J-201ENST00000620719 1426 ntBASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 TUBB8P8-201ENST00000458717 1058 ntBASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 AC073413.1-201ENST00000603927 732 ntBASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 FO393412.1-201ENST00000619841 382 ntBASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
SMC1BQ8NDV3 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
SMC1BQ8NDV3 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
SMC1BQ8NDV3 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
SMC1BQ8NDV3 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
SMC1BQ8NDV3 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.54
SMC1BQ8NDV3 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.54
SMC1BQ8NDV3 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
SMC1BQ8NDV3 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
SMC1BQ8NDV3 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
SMC1BQ8NDV3 RHBDF1P1-201ENST00000427504 1941 ntBASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 AC012362.1-201ENST00000434906 739 ntBASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 IRF3-215ENST00000596822 823 ntTSL 3 BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 AL136295.7-201ENST00000619226 1200 ntBASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 AC242376.2-201ENST00000619355 883 ntBASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SMC1BQ8NDV3 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms