Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 HCG4P8-203ENST00000443049 980 ntBASIC14.11□□□□□ -0.15
CCDC58Q4VC31 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 TPM1-226ENST00000560959 925 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 ARL16-209ENST00000573715 763 ntTSL 3 BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 ARL16-211ENST00000576135 694 ntTSL 3 BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 GALC-206ENST00000544807 2528 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 AC232323.1-201ENST00000540724 2099 ntBASIC14.11□□□□□ -0.15
CCDC58Q4VC31 REXO1L5P-201ENST00000622260 2098 ntBASIC14.11□□□□□ -0.15
CCDC58Q4VC31 GPI-205ENST00000586425 1799 ntTSL 5 BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 AP002414.3-201ENST00000589352 1468 ntBASIC14.11□□□□□ -0.15
CCDC58Q4VC31 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 KRT8P44-201ENST00000441609 1350 ntBASIC14.1□□□□□ -0.15
CCDC58Q4VC31 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 LRRFIP1P1-201ENST00000498774 2246 ntBASIC14.1□□□□□ -0.15
CCDC58Q4VC31 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 RNF146-204ENST00000476956 884 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 SKP2-204ENST00000508514 821 ntTSL 3 BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 AC243562.2-201ENST00000561247 970 ntBASIC14.1□□□□□ -0.15
CCDC58Q4VC31 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 SLC9A3P3-201ENST00000457608 2229 ntBASIC14.1□□□□□ -0.15
CCDC58Q4VC31 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC58Q4VC31 AC013726.1-201ENST00000563747 2285 ntBASIC14.1□□□□□ -0.15
CCDC58Q4VC31 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC58Q4VC31 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
CCDC58Q4VC31 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC58Q4VC31 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC58Q4VC31 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC58Q4VC31 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
CCDC58Q4VC31 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC58Q4VC31 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC58Q4VC31 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms