Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL28A1Q2UY09 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 ZBTB12BP-201ENST00000314232 1122 ntBASIC15.11■□□□□ 0.01
COL28A1Q2UY09 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 MIR326-201ENST00000362220 95 ntBASIC15.11■□□□□ 0.01
COL28A1Q2UY09 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 EIF4HP1-201ENST00000453115 687 ntBASIC15.11■□□□□ 0.01
COL28A1Q2UY09 RHOA-206ENST00000454011 889 ntTSL 2 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 OARD1-212ENST00000482515 832 ntTSL 2 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 HNRNPA1P13-201ENST00000510646 963 ntBASIC15.11■□□□□ 0.01
COL28A1Q2UY09 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 SPCS2P2-201ENST00000603270 608 ntBASIC15.11■□□□□ 0.01
COL28A1Q2UY09 AC133539.2-201ENST00000604757 467 ntBASIC15.11■□□□□ 0.01
COL28A1Q2UY09 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 MIR7845-201ENST00000618396 99 ntBASIC15.11■□□□□ 0.01
COL28A1Q2UY09 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 PCGF3-213ENST00000620529 1899 ntBASIC15.11■□□□□ 0.01
COL28A1Q2UY09 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC15.11■□□□□ 0.01
COL28A1Q2UY09 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 APOA1-205ENST00000375329 927 ntTSL 2 BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 AL662890.1-201ENST00000396818 632 ntBASIC15.1■□□□□ 0.01
COL28A1Q2UY09 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 AC104306.2-201ENST00000451877 341 ntBASIC15.1■□□□□ 0.01
COL28A1Q2UY09 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL28A1Q2UY09 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms